Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24730 229 / 2e-78 mRNA splicing factor, thioredoxin-like U5 snRNP (.1) AT5G08290 86 / 6e-22 YLS8 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022811 [exp] 266 / 5e-93 AT3G24730 261 / 7e-91 mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Lus10017390 [exp] 86 / 8e-22 AT5G08290 290 / 1e-102 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Lus10010188 [exp] 84 / 2e-21 AT5G08290 293 / 4e-104 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Lus10010189 [exp] 39 / 0.0003 AT5G08290 87 / 4e-23 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G287600 [exp] 227 / 9e-78 AT3G24730 245 / 8e-85 mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Potri.007G072700 [exp] 87 / 2e-22 AT5G08290 293 / 5e-104 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02966 [flax] [poplar] DIM1 Mitosis protein DIM1
Representative CDS sequence Show only first row Show all	>Lus10011878 pacid=23169201 polypeptide=Lus10011878 locus=Lus10011878.g ID=Lus10011878.BGIv1.0 annot-version=v1.0 ATGAGCTATCTTCTGCCGAATCTAACGAAGAAGAAGGAAATCGATTCAATAATCAGGGACACCATCGACAAGGTGCTCGTCCTCCGCTTCGGCCGCGCTT CCGACGCCACCTGTCTCCAGCTCGACGATATCCTGTCGAAATCGGCGAGGGAGGTCTCCAAGTTCGCGTCGGTGGCAGTCGTGGACATGGATTCCGACGA TGTGCAGGTCTACGTCAAGTACTTCGTCATCTCTCTGGTTCCTTCCACTGTCTTCTTCTTCAACGCTCACCATATGAAGATGGATTCCGGGACTGCTGAT CATACCAAATGGATTGGTGCATTTCACACTAAGCAGGACTTCATTGACGTCGTTGAGGCCATATTCAGAGGAGCCATGAAAGGCAAGCTGATAGTGAGTT GCCCCTTGCCCCCTGATCGAATACCCAAGTATCAGCTGTTTTACAAAGAAGTCTAG
AA sequence Show only first row Show all	>Lus10011878 pacid=23169201 polypeptide=Lus10011878 locus=Lus10011878.g ID=Lus10011878.BGIv1.0 annot-version=v1.0 MSYLLPNLTKKKEIDSIIRDTIDKVLVLRFGRASDATCLQLDDILSKSAREVSKFASVAVVDMDSDDVQVYVKYFVISLVPSTVFFFNAHHMKMDSGTAD HTKWIGAFHTKQDFIDVVEAIFRGAMKGKLIVSCPLPPDRIPKYQLFYKEV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24730			mRNA splicing factor, thioredo...		Lus10011878 [exp]	0	1
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10019927 [exp]	6.2	0.6650
AT3G02120			hydroxyproline-rich glycoprote...		Lus10015381 [exp]	15.4	0.6895
AT4G30820			cyclin-dependent kinase-activa...		Lus10022901 [exp]	16.7	0.6601
AT2G28105			unknown protein		Lus10016142 [exp]	18.9	0.6254
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10032982 [exp]	21.5	0.6790
AT5G01750			Protein of unknown function (D...		Lus10020780 [exp]	26.5	0.5814
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024889 [exp]	31.7	0.6555
AT1G60200			splicing factor PWI domain-con...		Lus10013003 [exp]	34.0	0.6539
AT3G07930			DNA glycosylase superfamily pr...		Lus10001994 [exp]	37.3	0.6369
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10040585 [exp]	39.2	0.6257

Compare expression of checked genes

Lus10011878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.