Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54380 265 / 4e-84 spliceosome protein-related (.1) AT2G42510 171 / 2e-47 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022813 [exp] 627 / 0 AT1G54380 283 / 2e-91 spliceosome protein-related (.1) Lus10025495 [exp] 62 / 1e-10 AT1G54380 50 / 1e-06 spliceosome protein-related (.1) Lus10026705 [exp] 62 / 2e-10 ND 45 / 5e-05 Lus10023803 [exp] 49 / 8e-08 ND 34 / 0.003
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G036200 [exp] 165 / 4e-45 AT1G54380 264 / 2e-79 spliceosome protein-related (.1) Potri.007G124150 [exp] 163 / 2e-44 AT1G54380 253 / 2e-75 spliceosome protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04938 [flax] [poplar] SIP1 Survival motor neuron (SMN) interacting protein 1 (SIP1)
Representative CDS sequence Show only first row Show all	>Lus10011880 pacid=23169198 polypeptide=Lus10011880 locus=Lus10011880.g ID=Lus10011880.BGIv1.0 annot-version=v1.0 ATGGCTGAAGACATGGATTCAGAAACCTTGTTGGAGGCGAAGAAGAAGCAATTGTTGGCAGACCTCGATGGCGGATCCATCTTTAAAGGAAAGAGCTTCT TCGAAGATGTTGACGATGGCAGTTCCGATGGATTCGCTGAATCTAATGAACCAGCAGAGATAGTCGTCTGTGAGAATCAAAAGAAGATCAGAAGGCGAAG AAGAAAGGGAAAGGATTTACTCAAGTGTTTGGAGAAAGATCAAACAAGTACGAATCAAGTTATCAACAACAGTTCATGTCCAGTCGACGGTTCCCCAAAG TACTCGAGGCTAGAGATGGAGGCCATGAGGTTTTCGAACATTGTGGAACAGAGGAACTTCTGGACACGTGTGTACACCGGGTTAGAAGCTGCGGTTGTAA AGGATTATGAGGATTTGTCATGCTCAAACACCAAGCATAGCAACTCTGGTCCCAAATTGGTCGTGGAGGAAGATGACAGTGATGATGATGATGAGTATGC TAGCATTCAAAGGCCAGCTTTTTATGTAGAAGGAGAACCGGATTTCGAGTCGGGCCCTCCAGAAGATGGATTAGAGTATCTTAGGAGAGTCAGGTGGGAA GCTGCTCGAATCCCGAAAGTCAAGGTGGCGAAAATCGACAAGCATACGATCAATAAAGAGCAAAGCGTGTATATGCCTCAGATACCTGACATTCCCAAGT GTCCAGACCATCTACTGCCTTCGAAAGTTTGGGAAGATGCATTTCTCGTAGATTTTTCGGAGCTGAGACTGTTGTTGGCAAGAGATGAAGACGATACTAA TGATCAGACAACTAAAGCCGAGGTAGATGAGAGTTCGGAGATTTATCCCACATTATCGGTGGTGCGAGGAATGGATTCTGTGTCTCGAGTTTCGTCATTG AATAAACGGATAAGCTTGGCGGAAAAGGCGAGTAAGTTATCCAAGGATGAGTGTGTGTGGCTGTTTGCTCTGTGTGCAGCGGTTGATACTCCGTTGCTGG CTGATACGAGTGCTGCGATTCGGAGTCTGCTGAGGAAATGTGCGAGCCTACGAGCGGGGAAGTCGGGATTGGATGATGAGGTTGTGATGTTGAATGTTCT GGCAACTGTCTGTGGCAGATACTTTGGACAGGCAGAATACTAA
AA sequence Show only first row Show all	>Lus10011880 pacid=23169198 polypeptide=Lus10011880 locus=Lus10011880.g ID=Lus10011880.BGIv1.0 annot-version=v1.0 MAEDMDSETLLEAKKKQLLADLDGGSIFKGKSFFEDVDDGSSDGFAESNEPAEIVVCENQKKIRRRRRKGKDLLKCLEKDQTSTNQVINNSSCPVDGSPK YSRLEMEAMRFSNIVEQRNFWTRVYTGLEAAVVKDYEDLSCSNTKHSNSGPKLVVEEDDSDDDDEYASIQRPAFYVEGEPDFESGPPEDGLEYLRRVRWE AARIPKVKVAKIDKHTINKEQSVYMPQIPDIPKCPDHLLPSKVWEDAFLVDFSELRLLLARDEDDTNDQTTKAEVDESSEIYPTLSVVRGMDSVSRVSSL NKRISLAEKASKLSKDECVWLFALCAAVDTPLLADTSAAIRSLLRKCASLRAGKSGLDDEVVMLNVLATVCGRYFGQAEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54380			spliceosome protein-related (....		Lus10011880 [exp]	0	1
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10001213 [exp]	1.0	0.9084
AT1G54380			spliceosome protein-related (....		Lus10022813 [exp]	1.4	0.8533
AT4G15770			RNA binding (.1)		Lus10000507 [exp]	2.4	0.8427
AT5G24840			tRNA (guanine-N-7) methyltrans...		Lus10020164 [exp]	4.5	0.8386
AT4G36680			Tetratricopeptide repeat (TPR)...		Lus10024025 [exp]	8.9	0.8309
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10030200 [exp]	9.0	0.8209
AT3G10110		MEE67	maternal effect embryo arrest ...		Lus10020223 [exp]	9.9	0.7898
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10027455 [exp]	11.4	0.7955
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Lus10006769 [exp]	12.0	0.7992
AT5G60670			Ribosomal protein L11 family p...		Lus10026506 [exp]	13.6	0.8288

Compare expression of checked genes

Lus10011880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.