Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21350 269 / 5e-91 MED6 RNA polymerase transcriptional regulation mediator-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022814 [exp] 368 / 4e-130 AT3G21350 326 / 2e-113 RNA polymerase transcriptional regulation mediator-related (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04934 [flax] [poplar] Med6 MED6 mediator sub complex component
Representative CDS sequence Show only first row Show all	>Lus10011881 pacid=23169202 polypeptide=Lus10011881 locus=Lus10011881.g ID=Lus10011881.BGIv1.0 annot-version=v1.0 ATGGCGACGCCGCCACCAAATTTCGAAGGAAACCCGATGCCGCCGCCGCCGCCACAGCCTCCGGGAACGGACATGACGGGGATGTGTTTCAGAGACCAGC TATGGCTCAACTCGTACCCTCTGGATCGTAACCTTATCTTCGATTACTTCGCCCTGTCGCCATTCTACGACTGGAATTACAACAACGAGCAGCTCCGGAT GCGCGCAATCCACCCTCTCGATCTCTCCCACCTCTCTAAGATGACGGGATTCGAGTACATGTTGAGCGAAGTGATGGAGCCGCATCTGTTCGTGATGAGG AAGCAGAGGAGGGACAGCCCTGAGAAAGTCATTCCAATGCTGACTTATTACGTCTTGGATGGCTCTATTTACCAGGCGCCTCAGCTCTGCAATGTCTTCG CTTCTCGAGTTGGACGAGCATTGTATTATATATCGAAAGCTTTTACTACGGCTGCTTCAAAGTTGGAGAAGATCGGATACGTTGAAGCTGAAGGCGACGG TGCAGCACCTTCTGAGCCAAAGCCCACTAAAGATGTAATCGACTTTAAGGAAGTTAAGAGAATCGATCATATCCTTGCCTCCTTACAACGCAAGCTACCC CCGGCTCCACCGCCGCCACCATTCCCGGAAGGGTACGTGCCCCCTGCGAGTAGCGAAACGGAGAAAGCAGGTGAGGGTCAACAACAAGGAGGAGAGACGC AGCAGCCTCCGCCAGTAGATCCAATTATTGATCAAGGTCCAGCTAAGAGAATGAAATTCTGA
AA sequence Show only first row Show all	>Lus10011881 pacid=23169202 polypeptide=Lus10011881 locus=Lus10011881.g ID=Lus10011881.BGIv1.0 annot-version=v1.0 MATPPPNFEGNPMPPPPPQPPGTDMTGMCFRDQLWLNSYPLDRNLIFDYFALSPFYDWNYNNEQLRMRAIHPLDLSHLSKMTGFEYMLSEVMEPHLFVMR KQRRDSPEKVIPMLTYYVLDGSIYQAPQLCNVFASRVGRALYYISKAFTTAASKLEKIGYVEAEGDGAAPSEPKPTKDVIDFKEVKRIDHILASLQRKLP PAPPPPPFPEGYVPPASSETEKAGEGQQQGGETQQPPPVDPIIDQGPAKRMKF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21350		MED6	RNA polymerase transcriptional...		Lus10011881 [exp]	0	1
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016539 [exp]	6.0	0.8827
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10041728 [exp]	11.7	0.8806
AT3G21350		MED6	RNA polymerase transcriptional...		Lus10022814 [exp]	15.0	0.8780
AT2G20820			unknown protein		Lus10031625 [exp]	27.5	0.8642
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10007718 [exp]	31.2	0.8608
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10035658 [exp]	31.7	0.8575
AT2G38730			Cyclophilin-like peptidyl-prol...		Lus10026161 [exp]	36.0	0.8535
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10017361 [exp]	36.1	0.8348
AT2G40230			HXXXD-type acyl-transferase fa...		Lus10028983 [exp]	36.4	0.8038
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10018654 [exp]	42.5	0.8476

Compare expression of checked genes

Lus10011881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.