Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07020 827 / 0 UGT80A2, SGT UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G43620 561 / 0 UGT80B1, TT15 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) AT5G24750 56 / 6e-08 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022815 [exp] 753 / 0 AT3G07020 742 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10020382 [exp] 748 / 0 AT3G07020 790 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024544 [exp] 679 / 0 AT3G07020 714 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009556 [exp] 678 / 0 AT3G07020 707 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10011883 [exp] 660 / 0 AT3G07020 648 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10018878 [exp] 577 / 0 AT1G43620 849 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10028572 [exp] 570 / 0 AT1G43620 840 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10020381 [exp] 537 / 0 AT3G07020 568 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009557 [exp] 244 / 6e-76 AT3G07020 261 / 6e-83 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G178300 [exp] 881 / 0 AT3G07020 817 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G238600 [exp] 863 / 0 AT3G07020 839 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G067100 [exp] 595 / 0 AT1G43620 800 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.005G193100 [exp] 580 / 0 AT1G43620 805 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.003G021100 [exp] 66 / 6e-11 AT5G24750 606 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase CL0113 [flax] [poplar] GT-B PF03033 [flax] [poplar] Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011882 pacid=23169257 polypeptide=Lus10011882 locus=Lus10011882.g ID=Lus10011882.BGIv1.0 annot-version=v1.0 ATGACGGAGTCGGCGGAGCATCGCCGCAACTCCTCGTCTTCCTCGTCGTCCTCCGCTTCCGTCGATGTTCAGGTGCCGGGCTCCAAGTCCGAGATCGGAG GTGCAACCTCCAGCGGCAACGGTCTCGAAGTGAAAATTAGCGGTGATGCTGCTGCTGCTGCTGGCGGGAATTCAGTGAATAACGGAGGAGATGCTGCAGA ATCTACATCAAGGACTAAAGGACTGGAATCAACTTCAAGTCAATTGAAGTTGGAAAGATCTAAGACTGAGAGACAAAGACCTCACAACATACTTGCCGAA GAGGCAGCACAAATTTTTGATGATAAAATTCCTCTCCAGCAGAAGCTTCAATTGTTAAAAAGAATAGCTACTGTCAAGGATAACGGGACTGTAGAATTTG AAGTTCCAGGAGATGTTGAACACCAATCTCTTGACACTAGAGGTGAAGATGCTTGCTCCACAGCTGCTGGGGATGAGCCTCTCGATGCAGCAGAGCTTCA GTATATACCTCCTTTGCAAGTAGTAATGCTTATTGTTGGGACACGTGGAGATGTGCAGCCTTTTATTGCTATCGGTAAACGACTGCAGGATTATGGTCAT CGTGTCAGATTAGCTACTCATTCAAATTTTAAGGAGTTTGTCTTGACAGCTGGGTTGGAGTTTTACCCATTAGGCGGAGATCCAAAGATTTTGGCTGGTT ATATGGTGAAAAATAAAGGCTTCCTGCCATCCGGGCCGTCAGAGATACCAGTGCAGCGAACTCAACTGAAGGACATAATATGGTCCTTACTCGCTGCTTG CAAGGAACCTGATATGGATTCTGGCATCCCCTTTAAGGCAGATGCTATAATTGCGAATCCTCCAGCCTATGGGCATACCCATGTAGCAGAGGCACTGAAA GTCCCGATCCACATATTCTTCACCATGCCATGGACGCCTACTAGTGAGTTTCCACATCCTTTGTCTCGGGTCAAGCAACCGGCTGGTTATAGGCTGTCAT ATCAAATAGTTGATTCTCTGATTTGGCTCGGAATACGGGATATGATAAATGACGTTAGGAAAAAGAAGTTGAAGCTACGTCCTGTTACCTATCTTAGTGG TTCACAGGGTAGCGAGTCAGAAGTGCCACATGCATACATATGGAGTCCTCATCTTGTTCCGAAACCAAAAGACTGGGGCCCAAAAATAGACGTGGTGGGT TTTTGCTTTCTCGATCTGGCATCAAATTTTGAACCTCCAGAAGAACTCGTCAAATGGCTGAAAGCTGGTCCAACACCCATTTATATTGGATTTGGTAGCC TTCCGGTTCAGGAGCCTGAGAAAATGACCCAAATAATTGTGGAGGCATTGGAACAAACTGGGCAGAGAGGCATCATTAACAAAGGCTGGGGTGGTCTTGG CAACTTGGCAGAGCCAAAGGACTGCATATATCTCTTAGACAACATTCCCCATGACTGGTTATTCCTGCAATGCAAAGCAGTGGTTCATCATGGAGGTGCT GGGACGACAGCTGCTGGTCTTAAAGCTGCTTGCCCAACAACAATCGTACCCTTCTTCGGCGACCAACCTTTCTGGGGCGAAAGAGTACATGCTAGAGGAG TCGGTCCGCCACCTATTCCAGTCGAGGAATTCACTCTCTCTAAATTGGTCGACGCTATAGAGTTCATGCTAGATCCCCAGGTGAAGGAGAAGGCAGTGGA GCTGGCCAAGGCAATGGAGAACGAAGACGGAGTAGCTGGAGCAGTTACAGCATTCTTCAAGCAACTTCCTAAGAAGAAGAAGAAGGACGAGCCCGAGCGC GTTCCTGAGCCGCCATCGAGCATGTTCTCGTTCAGCCGATGCTTCGGCTGCTCCTGA
AA sequence Show only first row Show all	>Lus10011882 pacid=23169257 polypeptide=Lus10011882 locus=Lus10011882.g ID=Lus10011882.BGIv1.0 annot-version=v1.0 MTESAEHRRNSSSSSSSSASVDVQVPGSKSEIGGATSSGNGLEVKISGDAAAAAGGNSVNNGGDAAESTSRTKGLESTSSQLKLERSKTERQRPHNILAE EAAQIFDDKIPLQQKLQLLKRIATVKDNGTVEFEVPGDVEHQSLDTRGEDACSTAAGDEPLDAAELQYIPPLQVVMLIVGTRGDVQPFIAIGKRLQDYGH RVRLATHSNFKEFVLTAGLEFYPLGGDPKILAGYMVKNKGFLPSGPSEIPVQRTQLKDIIWSLLAACKEPDMDSGIPFKADAIIANPPAYGHTHVAEALK VPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGSESEVPHAYIWSPHLVPKPKDWGPKIDVVG FCFLDLASNFEPPEELVKWLKAGPTPIYIGFGSLPVQEPEKMTQIIVEALEQTGQRGIINKGWGGLGNLAEPKDCIYLLDNIPHDWLFLQCKAVVHHGGA GTTAAGLKAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVEEFTLSKLVDAIEFMLDPQVKEKAVELAKAMENEDGVAGAVTAFFKQLPKKKKKDEPER VPEPPSSMFSFSRCFGCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10011882 [exp]	0	1
AT5G23340			RNI-like superfamily protein (...		Lus10013444 [exp]	4.1	0.8040
AT3G02740			Eukaryotic aspartyl protease f...		Lus10041103 [exp]	4.2	0.8014
AT5G23340			RNI-like superfamily protein (...		Lus10040998 [exp]	6.2	0.7867
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10013493 [exp]	15.9	0.7667
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10017065 [exp]	20.5	0.7800
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10014185 [exp]	25.5	0.7583
AT3G43220			Phosphoinositide phosphatase f...		Lus10027650 [exp]	26.4	0.7262
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10021625 [exp]	27.0	0.7133
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10039114 [exp]	27.3	0.7180
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10004626 [exp]	28.0	0.7113

Compare expression of checked genes

Lus10011882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.