Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07020 623 / 0 UGT80A2, SGT UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G43620 485 / 3e-166 UGT80B1, TT15 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) AT5G24750 44 / 0.0002 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011882 [exp] 676 / 0 AT3G07020 885 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022815 [exp] 654 / 0 AT3G07020 742 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10020382 [exp] 585 / 0 AT3G07020 790 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009556 [exp] 550 / 0 AT3G07020 707 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024544 [exp] 533 / 0 AT3G07020 714 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10018878 [exp] 500 / 3e-171 AT1G43620 849 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10028572 [exp] 496 / 2e-169 AT1G43620 840 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10020381 [exp] 427 / 4e-144 AT3G07020 568 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009557 [exp] 183 / 2e-53 AT3G07020 261 / 6e-83 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G178300 [exp] 634 / 0 AT3G07020 817 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G238600 [exp] 632 / 0 AT3G07020 839 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G067100 [exp] 501 / 5e-172 AT1G43620 800 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.005G193100 [exp] 496 / 7e-170 AT1G43620 805 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.003G021100 [exp] 51 / 2e-06 AT5G24750 606 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF03033 [flax] [poplar] Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011883 pacid=23169261 polypeptide=Lus10011883 locus=Lus10011883.g ID=Lus10011883.BGIv1.0 annot-version=v1.0 ATGCTTAGTAGTCTCAACGGATTGGAGCTTAGAAATTCCGAATCTAGATATGCTGGGAATCCTTGCGGCTGGCCTGGAGGATGCGGCAATGAGGGAACAG AGAGGAGGAGGAGGAGCCGGATTCTGCTTGGTTGCGGAGATTTCCGTCGTCGGTTTATCGGAGAAAGAGGAAACGATGGCCCACACGTTGAACGCCATTT TTGGAGCTTAATATTACTGGGATTTATCACTTACGGCTTGCTGGAGATCAAGGTGAATCTGTCAGTTTTGTGCTACTACGACTATTCATTTTCAGAAGTC TTCAAGATATCTTTCTGTGCAGCTGCAGGAGATGATGAGCCTCTCGGTGCAGTAGAGTTTCAGAATCTACCACCGTTGCAAATAGTAATGCTTATTGTTG GCACTCGAGGAGATGTGCAGCCATTTGTTGCGATCGGTTTACGACTGAAGGGTTATGGTCATCGTGTCAGAGTAGCTACTCATTCAATATTTAAGGAGTT TGTCTTGACAGCCGGGTTGGAGTTTTACCCTCTAGGTGGAGACTCAAAGGTTCTTGCTAGTTATATGGTGACGAATAAAGGCTTATTCCCATCCAACCCA TCCGAGATATCAGTTCATCGAAATCAAATGAAGGAAATAATATGGTCCTTGCTTCCTGCTTGTACGGAACCTGATATTGATTCGGGCATCCCCTTTACGG CAGAAGCTATAATTGCCAATCCTCCAACCATGGGGCATATTGATGTCGCAGAGGCACTACAGATTCCAATCCACATTTTCTTCACTCTACCTTGGACGTC GACTCATGAGTTTCCACATCCTCTTACTCGGGTCAAGCAAGCAGTTCTGTATTGGATGTCATATCAGATAGTCGACTCTCTGATTTGGCTGGGAATTGGG GATATTATAAATGACGTTAGGAAACGAGAGTTAAAGCTACGTCCTGTTACCTTTCGTACTGGTTTACGGAGCTCCAACTCTGACATACCATATGGATACC TTTGGAGTCCTGACCTTGTCCCTAAACCAACAGACTGGGGGCCAAATGTAGAGGTGGTGGGATATTGCTTTCTCGATCTGGCATCAAATTTTGAAGTTCC TGAAGAACTTGTCAAATGGCTGGAAGCTGGTCCAAAACCTATTTATATTGGATTTGGTAGCTGTCCAATTCAGGAACCTGAAAAAATTACCCAAATAATT GTTGAGGCATTGGAACAAACTGGACAAAGAGGCATCATTGACAAAGGCTGGGGTGGCCTGGGAAACTGTAAGGTTCATCATGGAGGTGCTGGGACGACAG CAGCTGGTCTTAAAGCTGCGTGTCCTACGACAATTGTACCCTTTGTTGCTGACCAACCTTTCTGGGGCGACCGAGTACATGCTAGAGGAGTCGGCCCTGC TCCTATTCCAGTCGAGGAATTCTCGCTTCCGAAATTGGTTGATGCTATAAAGTTCATGCTTGATCCTCAGGTGAAGGAGAGGGCAGTGGAGCTAGCCAAG GCAATGGAGAATGAAGATGGTGTAGCTGGAGCTGTAACAGCATTCTTCAAGCAACTCGTTAAGAACCAAAACAAGGCCAAGCCTGACCGGGTTTCGGAGC CATCGAGCCTGTTTCGGTTCGGTCGATGCTTCGGCTTTTCCTGA
AA sequence Show only first row Show all	>Lus10011883 pacid=23169261 polypeptide=Lus10011883 locus=Lus10011883.g ID=Lus10011883.BGIv1.0 annot-version=v1.0 MLSSLNGLELRNSESRYAGNPCGWPGGCGNEGTERRRRSRILLGCGDFRRRFIGERGNDGPHVERHFWSLILLGFITYGLLEIKVNLSVLCYYDYSFSEV FKISFCAAAGDDEPLGAVEFQNLPPLQIVMLIVGTRGDVQPFVAIGLRLKGYGHRVRVATHSIFKEFVLTAGLEFYPLGGDSKVLASYMVTNKGLFPSNP SEISVHRNQMKEIIWSLLPACTEPDIDSGIPFTAEAIIANPPTMGHIDVAEALQIPIHIFFTLPWTSTHEFPHPLTRVKQAVLYWMSYQIVDSLIWLGIG DIINDVRKRELKLRPVTFRTGLRSSNSDIPYGYLWSPDLVPKPTDWGPNVEVVGYCFLDLASNFEVPEELVKWLEAGPKPIYIGFGSCPIQEPEKITQII VEALEQTGQRGIIDKGWGGLGNCKVHHGGAGTTAAGLKAACPTTIVPFVADQPFWGDRVHARGVGPAPIPVEEFSLPKLVDAIKFMLDPQVKERAVELAK AMENEDGVAGAVTAFFKQLVKNQNKAKPDRVSEPSSLFRFGRCFGFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10011883 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10005361 [exp]	2.2	0.8720
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10022385 [exp]	5.2	0.8544
AT3G07570			Cytochrome b561/ferric reducta...		Lus10016080 [exp]	9.1	0.8874
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10009029 [exp]	12.0	0.8702
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10025987 [exp]	13.9	0.8873
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	16.2	0.8797
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10000217 [exp]	19.2	0.8028
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10003110 [exp]	19.9	0.8255
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10043298 [exp]	22.5	0.8581
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021392 [exp]	25.0	0.8199

Compare expression of checked genes

Lus10011883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.