Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48890 57 / 1e-10 C2H2ZnF LATE LATE FLOWERING, C2H2-like zinc finger protein (.1) AT5G14010 54 / 3e-09 C2H2ZnF KNUCKLES, KNU KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G80730 52 / 3e-08 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT1G24625 51 / 4e-08 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT5G57520 50 / 9e-08 C2H2ZnF ATZFP2, ZFP2 zinc finger protein 2 (.1) AT1G66140 50 / 1e-07 C2H2ZnF ZFP4 zinc finger protein 4 (.1) AT5G01860 46 / 3e-06 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G25160 46 / 3e-06 C2H2ZnF ZFP3 zinc finger protein 3 (.1) AT5G10970 46 / 3e-06 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G13400 43 / 3e-05 C2H2ZnF JGL, NUB NUBBIN, JAGGED-LIKE, C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022816 [exp] 181 / 3e-58 AT5G14010 65 / 1e-13 KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10013243 [exp] 56 / 4e-09 AT1G66140 125 / 3e-34 zinc finger protein 4 (.1) Lus10026597 [exp] 53 / 8e-09 AT1G66140 85 / 1e-20 zinc finger protein 4 (.1) Lus10030764 [exp] 54 / 1e-08 AT1G66140 124 / 1e-33 zinc finger protein 4 (.1) Lus10014350 [exp] 52 / 4e-08 AT1G80730 110 / 1e-29 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10006960 [exp] 50 / 8e-08 AT5G57520 92 / 2e-24 zinc finger protein 2 (.1) Lus10025471 [exp] 50 / 8e-08 AT5G57520 92 / 3e-24 zinc finger protein 2 (.1) Lus10010388 [exp] 50 / 1e-07 AT1G24625 88 / 4e-21 zinc finger protein 7 (.1) Lus10028997 [exp] 50 / 1e-07 AT1G24625 103 / 1e-27 zinc finger protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G238700 [exp] 88 / 6e-22 AT5G48890 71 / 1e-15 LATE FLOWERING, C2H2-like zinc finger protein (.1) Potri.014G178200 [exp] 87 / 1e-21 AT5G48890 61 / 1e-11 LATE FLOWERING, C2H2-like zinc finger protein (.1) Potri.001G324600 [exp] 57 / 3e-10 AT5G14010 75 / 5e-17 KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G298700 [exp] 53 / 1e-08 AT1G24625 86 / 1e-20 zinc finger protein 7 (.1) Potri.009G093300 [exp] 52 / 2e-08 AT1G24625 89 / 6e-22 zinc finger protein 7 (.1) Potri.006G169800 [exp] 51 / 4e-08 AT5G57520 94 / 7e-25 zinc finger protein 2 (.1) Potri.018G021400 [exp] 51 / 6e-08 AT5G10970 165 / 8e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G138000 [exp] 51 / 7e-08 AT1G66140 155 / 2e-46 zinc finger protein 4 (.1) Potri.003G180600 [exp] 51 / 8e-08 AT5G10970 144 / 1e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G102700 [exp] 51 / 8e-08 AT1G66140 157 / 4e-47 zinc finger protein 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011884 pacid=23169204 polypeptide=Lus10011884 locus=Lus10011884.g ID=Lus10011884.BGIv1.0 annot-version=v1.0 ATGGCCATCGAGCAAGAGATCAACAGAAACCATGAAGAACAACAACCCAGCAATGGCAGAGTGTTCCCCTGCCTTTTCTGCGCGAGGAAATTCTACAGCT CGCAAGCATTAGGGGGACACCAGAACGCTCATAAGAAGGAGAGGAACGCCGCCAGAAGGGCGAAAAGAGCGTCGGAGTACGCCGGGGTTGCTTCGCCGGC GTCGCCGTCAGCGTTGGTTTTCTCTCCTCATCACCACCAGATGCATTACCATCAATACGGCCAGCAGAATGTCCCGTCTTTTTACATTGCCGCGCATGCG GCCAGGCTGCAGTGCATCCCTGGACAGTTTCCGGGCCGGACGGGAGCGAGCGGTGGCGGGGGTGGAAGGTTCGACGGCGTGGTGATTTATGGTGGCGGGA AGGTGGAGGAAGATGATGATGATGAGGAGGAGGAAGAGAGCTTGGTGAATTGGCAGAGGAGTGTAAGGTACAGAGGTGAAAGCGAGGAGGAGAGGATTAA TGGCGGTGGTGATTCCGTTGATCAAAAGGATCAGAAGCTTGATTTGTCCCTCCATTTATGA
AA sequence Show only first row Show all	>Lus10011884 pacid=23169204 polypeptide=Lus10011884 locus=Lus10011884.g ID=Lus10011884.BGIv1.0 annot-version=v1.0 MAIEQEINRNHEEQQPSNGRVFPCLFCARKFYSSQALGGHQNAHKKERNAARRAKRASEYAGVASPASPSALVFSPHHHQMHYHQYGQQNVPSFYIAAHA ARLQCIPGQFPGRTGASGGGGGRFDGVVIYGGGKVEEDDDDEEEEESLVNWQRSVRYRGESEEERINGGGDSVDQKDQKLDLSLHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14010	C2H2ZnF	KNUCKLES, KNU	KNUCKLES, C2H2 and C2HC zinc f...		Lus10011884 [exp]	0	1
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10013573 [exp]	14.8	0.9288
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10017279 [exp]	20.8	0.9246
AT1G50310		ATSTP9	sugar transporter 9 (.1)		Lus10013441 [exp]	27.2	0.9196
AT1G02790		PGA4	polygalacturonase 4 (.1)		Lus10012489 [exp]	30.8	0.9192
AT3G24130			Pectin lyase-like superfamily ...		Lus10016678 [exp]	34.8	0.9186
					Lus10013528 [exp]	38.5	0.9175
AT1G71120		GLIP6	GDSL-motif lipase/hydrolase 6 ...		Lus10035266 [exp]	40.7	0.9171
					Lus10036646 [exp]	44.3	0.9166
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Lus10023732 [exp]	47.4	0.9159
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012185 [exp]	50.9	0.9157

Compare expression of checked genes

Lus10011884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.