Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13710 634 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G24670 633 / 0 Pectin lyase-like superfamily protein (.1) AT3G07010 632 / 0 Pectin lyase-like superfamily protein (.1) AT1G04680 623 / 0 Pectin lyase-like superfamily protein (.1) AT5G48900 605 / 0 Pectin lyase-like superfamily protein (.1) AT4G13210 591 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G24230 559 / 0 Pectate lyase family protein (.1) AT1G67750 558 / 0 Pectate lyase family protein (.1) AT4G24780 554 / 0 Pectin lyase-like superfamily protein (.1.2) AT5G63180 539 / 0 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022817 [exp] 817 / 0 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 710 / 0 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10023679 [exp] 646 / 0 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011758 [exp] 623 / 0 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10006456 [exp] 545 / 0 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10011400 [exp] 543 / 0 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10036946 [exp] 536 / 0 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10033037 [exp] 518 / 0 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 515 / 0 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G238800 [exp] 654 / 0 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G052300 [exp] 650 / 0 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.014G178100 [exp] 649 / 0 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G175900 [exp] 637 / 0 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 561 / 0 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 555 / 0 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G339500 [exp] 538 / 0 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 535 / 0 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.010G051800 [exp] 527 / 0 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.006G122000 [exp] 471 / 4e-164 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10011885 pacid=23169214 polypeptide=Lus10011885 locus=Lus10011885.g ID=Lus10011885.BGIv1.0 annot-version=v1.0 ATGGCGGTTTCGTTTCGGTTCATTCCACTAGCTGGATTGCTGCTCGTATTGCTCATGTTCGTCGCCGTCAATGCTGCACCGGCCGACAAGGAATCTATAC AACAGCATCAGCAGCTTAATCTGAGCAAGGTGAATGACGGTGCGCTGAACGAGCATGCTGTCGAGAATCCGGAGGAGATTGCCGAATTTGTGAATGAGAG CATTGTGAACAGTACAGCTAGAAGGAACCTAGGCTACTTCTCATGTTCGACCGGTAACCCAATCGACGACTGCTGGCGATGTGACCCGTACTGGCAAGCA CACAGGAAGCGTCTAGCTAACTGCGCTATTGGGTTCGGCCGCAACGCTATTGGCGGTCGCGATGGACGATACTATGTTGTAACGGACCCCAATGATGATG ATCCGGTTAACCCAAGACCCGGAACTCTCAGACACGCTGTGATTCAGGACAGACCGCTCTGGATCGTGTTCAAGAGGGACATGGTGATCACTCTGAAGCA GGAGCTTATCATGAACAGCTTCAAGACTATTGATGGCAGGGGAGCGAACGTTCACATTGCCTACGGGGCTTGCCTCACGATCCAGTTTGTGACCAATGTG ATCATTCACGGGTTACATATTCACGATTGTAAGCCCACGGGGAACGCCATGGTCAGGAGTTCCCCTACCCATTATGGGTGGAGGTCTATGGCTGACGGTG ATGCAGTCTCGATTTTTGGGTCGAGTCACATTTGGGTCGACCATAACTCGCTCTCTAATTGCGCTGACGGGTTGGTTGATGCCGTTATGGGGTCTACCGC TATCACCATTTCCAACAACTACTTCACCCACCACAATGAGGTTATATTGTTGGGACATAGTGACTCGTATGTAAGGGACAAGCAAATGCAGGTCACGATT GCGTACAACCACTTCGGAGAAGGGCTTATCCAACGAATGCCTAGGTGTCGGCACGGATACTTCCATGTGGTGAACAACGACTACACACACTGGGAAATGT ATGCAATTGGAGGAAGTGCAGACCCTACCATTAACAGCCAAGGCAACAGATACCTTGCCCCAAACAACCCTTTTGCCAAAGAGGCGACGAAGCGAGTTGA CACATACAATGGTGTGTGGAAAGGGTGGAACTGGAGATCACAAGGGGATCTTTTTCTGAATGGTGCTTACTTCACAGCTTCAGGGACAAGAGCCGGAGCC AGCTATGCTCGAGCTTCGAGCTTGGCTGCAAAGCCTTCGTCTTTAGTCGGGATGATGACTGGAACTGCTGGTGCATTGACCTGCCGCAGAGGAAGATCTT GTTGA
AA sequence Show only first row Show all	>Lus10011885 pacid=23169214 polypeptide=Lus10011885 locus=Lus10011885.g ID=Lus10011885.BGIv1.0 annot-version=v1.0 MAVSFRFIPLAGLLLVLLMFVAVNAAPADKESIQQHQQLNLSKVNDGALNEHAVENPEEIAEFVNESIVNSTARRNLGYFSCSTGNPIDDCWRCDPYWQA HRKRLANCAIGFGRNAIGGRDGRYYVVTDPNDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACLTIQFVTNV IIHGLHIHDCKPTGNAMVRSSPTHYGWRSMADGDAVSIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVILLGHSDSYVRDKQMQVTI AYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPNNPFAKEATKRVDTYNGVWKGWNWRSQGDLFLNGAYFTASGTRAGA SYARASSLAAKPSSLVGMMTGTAGALTCRRGRSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07010			Pectin lyase-like superfamily ...		Lus10011885 [exp]	0	1
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10018765 [exp]	1.4	0.9759
AT3G24670			Pectin lyase-like superfamily ...		Lus10022817 [exp]	2.0	0.9698
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10018766 [exp]	2.8	0.9730
AT3G08030			Protein of unknown function, D...		Lus10039602 [exp]	2.8	0.9628
AT5G15140			Galactose mutarotase-like supe...		Lus10005251 [exp]	4.5	0.9687
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10033939 [exp]	4.9	0.9721
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Lus10002185 [exp]	5.9	0.9644
AT5G12250		TUB6	beta-6 tubulin (.1)		Lus10008528 [exp]	7.2	0.9374
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10031470 [exp]	8.8	0.9559
AT1G06930			unknown protein		Lus10009096 [exp]	8.8	0.9206

Compare expression of checked genes

Lus10011885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.