Plant FIBer expression Database

Lus10011887 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G13220 114 / 4e-32 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022819
[exp]
194 / 2e-63 AT4G13220 159 / 7e-50 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G251800
[exp]
135 / 2e-40 AT4G13220 155 / 2e-48 unknown protein
PFAM info
Representative CDS sequence
>Lus10011887 pacid=23169203 polypeptide=Lus10011887 locus=Lus10011887.g ID=Lus10011887.BGIv1.0 annot-version=v1.0
ATGGCTGCAGCTTCTCTTTCTACGAGCCTCACGCGATGTCTCTCAGCTCCGACCAGCTCAGCCGCCATCAGCACCTCCGCATTCCTTTCCCTGTCCTCCG
TCTTCTTCAGGCCTAGTAGTAGCCCCACCGGCGTCCTCCGTAGCCAACGATTATCCATCCGCCGCAAGTCTCCTTCAGCTCCGGCTATCGTCGCTGCTCA
GTCCAATTTATTACGAGTAATTCAAACAGTGTGGAAAGTTGGGAGAGACGGCATTGATGCAGGAACCAGTCTTGTGCCTGAATCAATTCCAAGGCCAATT
GCCAGAGTTTCAGTAGCCGTTGCATTGGCCACTGTTTCCCTCTTTGTGATCAAGTCGTTCTTGTCTACTGCATTCTTTGCCCTGGCTACAATGGGGCTTG
TTTATTTCCTGTTCATTGCCTTGAACAAAGATGAAGGTCCCAAAAGAGGTTCGGAGGACTCCAATGGTTCTTCTTCTTCGTCCTCTTCATTCTCGTCTGA
GGATGAAGCTTTAGAGGAAGCTAGGAGAATCATGGAGAAGTACAAGAAATAG
AA sequence
>Lus10011887 pacid=23169203 polypeptide=Lus10011887 locus=Lus10011887.g ID=Lus10011887.BGIv1.0 annot-version=v1.0
MAAASLSTSLTRCLSAPTSSAAISTSAFLSLSSVFFRPSSSPTGVLRSQRLSIRRKSPSAPAIVAAQSNLLRVIQTVWKVGRDGIDAGTSLVPESIPRPI
ARVSVAVALATVSLFVIKSFLSTAFFALATMGLVYFLFIALNKDEGPKRGSEDSNGSSSSSSSFSSEDEALEEARRIMEKYKK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G13220 unknown protein Lus10011887
[exp]
0 1
AT4G13220 unknown protein Lus10022819
[exp]
1.0 0.9398
AT3G46630 Protein of unknown function (D... Lus10024797
[exp]
5.3 0.9187
AT1G60950 FED A, ATFD2, F... FERREDOXIN 2, 2Fe-2S ferredoxi... Lus10001369
[exp]
6.7 0.9211
AT1G54500 Rubredoxin-like superfamily pr... Lus10019005
[exp]
7.7 0.9261
AT1G69390 ARC12, ATMINE1 accumulation and replication o... Lus10026638
[exp]
8.7 0.8889
AT5G46580 pentatricopeptide (PPR) repeat... Lus10004555
[exp]
11.8 0.9033
AT1G45230 Protein of unknown function (D... Lus10009756
[exp]
11.8 0.9143
AT5G45040 CYTC6A cytochrome c6A, Cytochrome c (... Lus10036207
[exp]
12.7 0.9116
AT2G27680 NAD(P)-linked oxidoreductase s... Lus10020578
[exp]
13.7 0.9104
AT3G15900 unknown protein Lus10011486
[exp]
16.3 0.8990

Lus10011887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.