Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24650 303 / 1e-92 B3 SIS10, ABI3 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) AT3G26790 136 / 2e-35 B3 FUS3 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) AT1G28300 123 / 3e-30 B3 LEC2 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) AT2G30470 82 / 5e-16 B3 HSI2, VAL1 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) AT4G32010 77 / 3e-14 B3 HSL1, HSI2-L1, VAL2 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) AT4G21550 74 / 3e-13 B3 HSI2-L2, VAL3 VP1/ABI3-like 3 (.1) AT4G01500 56 / 3e-08 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) AT1G68840 56 / 3e-08 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT1G25560 54 / 3e-07 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) AT1G13260 53 / 4e-07 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022820 [exp] 619 / 0 AT3G24650 313 / 1e-100 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Lus10022821 [exp] 139 / 2e-37 ND 39 / 0.002 Lus10012572 [exp] 135 / 6e-35 AT3G26790 259 / 4e-85 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10041521 [exp] 135 / 7e-35 AT3G26790 255 / 1e-83 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10015428 [exp] 107 / 1e-25 AT1G28300 163 / 1e-47 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Lus10018440 [exp] 89 / 9e-18 AT4G32010 487 / 1e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10011245 [exp] 89 / 9e-18 AT2G30470 399 / 1e-122 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Lus10022741 [exp] 82 / 8e-16 AT4G32010 748 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025226 [exp] 77 / 3e-14 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G252000 [exp] 432 / 1e-141 AT3G24650 499 / 2e-167 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Potri.001G322700 [exp] 134 / 1e-34 AT3G26790 279 / 3e-93 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.017G061200 [exp] 132 / 7e-34 AT3G26790 288 / 8e-97 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.004G045800 [exp] 122 / 1e-29 AT1G28300 201 / 2e-60 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Potri.011G054000 [exp] 117 / 4e-28 AT1G28300 154 / 5e-43 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Potri.019G130300 [exp] 84 / 1e-16 AT2G30470 757 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.013G157500 [exp] 84 / 2e-16 AT2G30470 767 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.011G043600 [exp] 79 / 6e-15 AT4G32010 479 / 5e-157 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.004G035300 [exp] 77 / 3e-14 AT4G32010 483 / 3e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.016G136500 [exp] 76 / 6e-14 AT4G32010 789 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10011888 pacid=23169185 polypeptide=Lus10011888 locus=Lus10011888.g ID=Lus10011888.BGIv1.0 annot-version=v1.0 ATGCATGAAGAAGAAGATCTCTATGCAGCCGATCAGATCTGGGCGCCGGAGCAGGATCCCGGCAATAATCTTCTCGACGGTTCAATCTTCTACAAGGGAG CCGACGGGGGAAGCGGAGGAGGAGACTTCCCTCCTCTGCCGGATTTCCCCACCATGTCTTCATCATCATCTTCCACCTCCTCCATGCCTCCGGCCACAAC AGTCAAGCCGCCGCCGACTCCCTCCGCCGCTGCGGCGATGAGCACATCCTCCTCCGCCTCCTCGGAGTCGAGTCACACTAATCATAATAACAATAATAGT AGTTATTGTTATTACGAGGATAACAGCAACGTTTACAATACTGATCAGATGGTTGACACTCCTTGCGCCGGAGCACTGTCGTCGACCGCTTCTATGGAGA TCTCCGAGCAGCTGCCACCGGTGGGGTTAGAGTCGATCGACTGTTGCATGGACGGGATGGATGATTTCGGCTGCATGGATTTGCTAATGGATCCCATTTT CGGCGGTGGGGACCACCTCGACGGTTTTCAGCAACAGTACGAGAGCCAAGACGGCGTCGTTCCGGTGCAGCAGCAGGCGAAGGATGCGGCGGCGGTGGGG GAGGAGGATTTAGGAGAAGTGTTTTTGGAGTGGCTGAAGAATAACAAGGAGAGCGTCTCCGCCGACGATCTGCGGCGGATCAAGATCAAGAAGTCAACCA TTGACTCCGCCGCCAAGCGGCTCGGCGGAGGGAAAGAAGCTATGAAGCAGCTGCTCAAGCTCATCCTCGAGTGGGTCCAGATGAACCATCTCCATCGCCG TCGTAGCAACAAATACGATAATACGGAAGCTGACGTGGCAGTGGAAAATTCCGATCCTGCCCCTCCGCCGCTTCCCACGAGTTATGATAATTACCACCAA AGTACTACTCAGGATAATACTGGTTACCTGGATCCGGTTAACCCATGGGCTACGGCGTCGGATCCGGTAGTAGGGTACCCGTACGGAATGGGAAGCGACC CGTTTGGGAATAACGGTGGTGGGGTTGTGGGTCCCAATTTCAACGCGAATTACGGAGTCCACCAGCACCAGTCAACAGATTACAATTTCACCAGTCAGGT GAACGAGTCGGCTCAGTCATGGCCGAGTTCGCGATTTCCGACGCCAGCTCCTTCTCCTCCTGTTCACTACGGCGGCGGCAGATTCGACGGTTTTACCCAA CCGGGTGGGTTTTCGGGTTATCTTAACCAGAACCAGTATCCGTACCCGTATCTCTCTGCTGCAACGGCGGAACAGAGCGGCGGAGGCGGACAGTGCAGGG GAGGGGATACGAATGGGCTGGTGAGAATGGGGTCTTCGGCGACGAAGGAGGCGAGGAAGAAGAGAATGGCGAGGCAGAGGCGGTTCATTCCTCATCACCA CCGCAATCATCACACTACCGGCGCCGGCCTAGCTGAAAATCAGGTGGGGGCGGGATTAGTACAGCAGCAGCAGCAGGGGAACTTGGTTTACTGGCCAATG CCACCACAAACAGGGATTAATGGCCCTGGATTGGTTCCAATGGATGGATCGGCGGTGGTGCAGACGGTGGATCGACCGGCAGTGCAGAACCAGAACCATC AGAAGCAGGGAGGGGCGTCGGATAAGCGAAAGGGTTGGAAAGCGGAGAAGAACTTGAGGTTTCTGCTGCAGAAAGTGTTGAAGCAAAGCGATGTTGGCAG CCTTGGCAGGATAGTCCTCCCCAAGAAGGAAGCTGAGACGCATCTGCCAGAACTCGATGCAAGGGACGGAATATCCATTGCCATGGAAGACATCGGGACT TCTCGCGTTTGGAACATGCGCTACAGTCTCAGATTCTGGCCCAACAACAAAAGCAGGATGTATCTCCTTGAAAACACAGGAGACTTCGTGAGGGCAAATG GACTCCAAGAAGGAGACTTCATAGTCATCTACTCCGATGTCAAATGTGGCAAATACTTGATACGAGGAGTTAAAGTAAGGCAACCAGCAGGGCTTACTAA GCCTGAGAACAAGAAGGCAGCTACAGCAGCTAATGGAAGCAAATCTCAGAGAAAGCCACCTGCAAATTCATCATCCGCCGCTAATAACAAAACAACAACG CCAGTCCAACAACTCGATACATACAGATAA
AA sequence Show only first row Show all	>Lus10011888 pacid=23169185 polypeptide=Lus10011888 locus=Lus10011888.g ID=Lus10011888.BGIv1.0 annot-version=v1.0 MHEEEDLYAADQIWAPEQDPGNNLLDGSIFYKGADGGSGGGDFPPLPDFPTMSSSSSSTSSMPPATTVKPPPTPSAAAAMSTSSSASSESSHTNHNNNNS SYCYYEDNSNVYNTDQMVDTPCAGALSSTASMEISEQLPPVGLESIDCCMDGMDDFGCMDLLMDPIFGGGDHLDGFQQQYESQDGVVPVQQQAKDAAAVG EEDLGEVFLEWLKNNKESVSADDLRRIKIKKSTIDSAAKRLGGGKEAMKQLLKLILEWVQMNHLHRRRSNKYDNTEADVAVENSDPAPPPLPTSYDNYHQ STTQDNTGYLDPVNPWATASDPVVGYPYGMGSDPFGNNGGGVVGPNFNANYGVHQHQSTDYNFTSQVNESAQSWPSSRFPTPAPSPPVHYGGGRFDGFTQ PGGFSGYLNQNQYPYPYLSAATAEQSGGGGQCRGGDTNGLVRMGSSATKEARKKRMARQRRFIPHHHRNHHTTGAGLAENQVGAGLVQQQQQGNLVYWPM PPQTGINGPGLVPMDGSAVVQTVDRPAVQNQNHQKQGGASDKRKGWKAEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELDARDGISIAMEDIGT SRVWNMRYSLRFWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYLIRGVKVRQPAGLTKPENKKAATAANGSKSQRKPPANSSSAANNKTTT PVQQLDTYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24650	B3	SIS10, ABI3	SUGAR INSENSITIVE 10, ABSCISIC...		Lus10011888 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10012852 [exp]	4.2	0.6746
AT3G02125			unknown protein		Lus10032983 [exp]	6.9	0.6494
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	23.2	0.6689
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10011660 [exp]	28.0	0.6430
AT4G08280			Thioredoxin superfamily protei...		Lus10028031 [exp]	35.0	0.5818
AT3G15810			Protein of unknown function (D...		Lus10006656 [exp]	48.1	0.5660
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10010220 [exp]	56.9	0.5339
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Lus10026027 [exp]	60.5	0.5284
					Lus10001199 [exp]	67.3	0.5325
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10029577 [exp]	70.5	0.5385

Compare expression of checked genes

Lus10011888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.