Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29000 113 / 1e-29 Heavy metal transport/detoxification superfamily protein (.1) AT5G60800 44 / 7e-05 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G50740 41 / 0.0005 Heavy metal transport/detoxification superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022827 [exp] 221 / 2e-72 AT1G29000 59 / 2e-10 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G178800 [exp] 136 / 2e-38 AT1G29000 115 / 1e-30 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G006100 [exp] 46 / 2e-05 AT5G50740 143 / 2e-41 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.016G093100 [exp] 43 / 0.0002 AT2G36950 123 / 5e-32 Heavy metal transport/detoxification superfamily protein (.1) Potri.016G006600 [exp] 42 / 0.0002 AT5G50740 153 / 5e-45 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.015G099500 [exp] 42 / 0.0004 AT5G50740 214 / 7e-68 Heavy metal transport/detoxification superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10011893 pacid=23169216 polypeptide=Lus10011893 locus=Lus10011893.g ID=Lus10011893.BGIv1.0 annot-version=v1.0 ATGTCTCCGAAATTAGAGGCGGCGGAGGAGAAGAAGGTGACCGTCGTAAAGAAAGAAGTGATCACCGCCGTTTACAAGCTCAACTTGCATTGCCAGCAAT GTGCCTTCCATGTCAAGAAGCCCCTTCTCGCTACCCAAGGCAAGTATGAACCAGTGAGGGTTCACAGTGTTATTGCGGATGTCGAGAAGGGTGAGCTGAA GGTGAAAGGTGTGATAGAGGTGAAAGAGATTCACAAAGTAATTGAGAAGATTAGCAAAAGGAAAGTTGAGTTTGTAACATGTGAAACAGAGAGCAAGTCC AACAAGGTTGAAGAAGTTAAACAAACTAAAGAAATTGTACGGACCACGACAATCAAGGTTCACCTACACTGCACCAAGTGTGAGATTGACCTGAAGAAGA AATTACTCAAGCACAAAGGAATTCACGTTGTGAAAACGGACACGAAAACACAGACAGTCACGATCGAAGGGACCATCGAGTCGGAGAAACTGCTGATATA CATGAGGAAGAGGGTGCACAAGCGCGCGGAGATTGTGGTTTCGGAGAAGGCTGAGAAGAAGAAAGAGGAAAGCGAATGCAGCAGCGATGATGAAAAGGAG ACCAATGAGTCAAATCCATGCAGCGAAGATAAGGAAACAACGACGACTGAAGTGATCGAAACCAAGTGTAGTTGTCGAATTGAAGCTAGAAAATGTAGTA GGTGTTGTTGCATCGAACCCATTGATAGGAAATGTGATTACTGCAGGTGTAGCGTTGAGTGCGAGAAAACAGTGTGTGTTCAACATAATGGCGGCGTGCC TTATTTCGTTCACTATGTGTACGCTCCTCAGCTGTTTAGCGACGAAAACCCTAACGCTTGCTATGTTATGTAA
AA sequence Show only first row Show all	>Lus10011893 pacid=23169216 polypeptide=Lus10011893 locus=Lus10011893.g ID=Lus10011893.BGIv1.0 annot-version=v1.0 MSPKLEAAEEKKVTVVKKEVITAVYKLNLHCQQCAFHVKKPLLATQGKYEPVRVHSVIADVEKGELKVKGVIEVKEIHKVIEKISKRKVEFVTCETESKS NKVEEVKQTKEIVRTTTIKVHLHCTKCEIDLKKKLLKHKGIHVVKTDTKTQTVTIEGTIESEKLLIYMRKRVHKRAEIVVSEKAEKKKEESECSSDDEKE TNESNPCSEDKETTTTEVIETKCSCRIEARKCSRCCCIEPIDRKCDYCRCSVECEKTVCVQHNGGVPYFVHYVYAPQLFSDENPNACYVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29000			Heavy metal transport/detoxifi...		Lus10011893 [exp]	0	1
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10039880 [exp]	2.4	0.9597
AT4G12010			Disease resistance protein (TI...		Lus10008221 [exp]	2.8	0.9528
AT1G64000	WRKY	ATWRKY56, WRKY5...	WRKY DNA-binding protein 56 (....		Lus10036401 [exp]	2.8	0.9582
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10019361 [exp]	3.6	0.9376
					Lus10018643 [exp]	6.0	0.9553
AT5G10280	MYB	ATMYB92, AtMYB6...	myb domain protein 92 (.1)		Lus10036472 [exp]	7.3	0.9483
AT1G16310			Cation efflux family protein (...		Lus10000061 [exp]	7.5	0.9343
AT1G64000	WRKY	ATWRKY56, WRKY5...	WRKY DNA-binding protein 56 (....		Lus10007906 [exp]	7.7	0.9511
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10032096 [exp]	8.5	0.9417
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10001972 [exp]	11.7	0.9433

Compare expression of checked genes

Lus10011893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.