Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60720 39 / 0.0008 PDLP8 plasmodesmata-located protein 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022828 [exp] 248 / 2e-86 AT2G01660 43 / 2e-05 plasmodesmata-located protein 6 (.1.2) Lus10028019 [exp] 62 / 9e-13 AT1G70530 44 / 8e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10012369 [exp] 59 / 8e-12 AT4G11470 42 / 6e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) Lus10015472 [exp] 57 / 4e-11 AT5G48540 42 / 4e-05 receptor-like protein kinase-related family protein (.1) Lus10020927 [exp] 57 / 7e-11 AT1G19090 45 / 7e-06 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10033450 [exp] 56 / 1e-10 AT1G19090 45 / 7e-06 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10033389 [exp] 56 / 2e-10 AT1G19090 44 / 2e-05 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10028018 [exp] 56 / 3e-10 ND 39 / 5e-04 Lus10003753 [exp] 49 / 6e-08 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 55 / 3e-10 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1) Potri.010G108100 [exp] 44 / 1e-05 AT2G01660 265 / 2e-88 plasmodesmata-located protein 6 (.1.2) Potri.011G027900 [exp] 42 / 6e-05 AT4G23180 542 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G027800 [exp] 39 / 0.0006 AT4G23180 516 / 9e-176 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023700 [exp] 39 / 0.0008 AT4G05200 474 / 3e-159 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G028600 [exp] 39 / 0.0008 AT4G21410 554 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10011894 pacid=23169208 polypeptide=Lus10011894 locus=Lus10011894.g ID=Lus10011894.BGIv1.0 annot-version=v1.0 ATGAAAGGAACAAATACAATCCCGTCGCTATTGCTCCTTTCATTAGTCGCCTTTTCTCTCACTTTGACCGTCGCGAATGCTGAGCTGGACAAAGGGTTCA TTTCCCAAAACTGCAGCCACGCCAGGTACTCGAAGAACGACGGAGTCAAGCATTCGATCTCCGTGGTGCTCACGCAGCTGGTGTCGGAGGCCGTCGACAG GATAACCGTCCACAACAAGGATTACCGTGCGCATTACCCTTCTAAGAATTCCCCTCCATTGGTGTACGGACATGCTTACTGTTGGCGGACTTGGGGGATC CAGTCGACGTGCCGGAGCTGTCTGAAGCAAGCAAAGAGGATGCTCGTTCGCGGGTGCCCCCATAGAGCCGGAGCTGCTATCGAATTGGAGATGTGCTCTA TGCGTTACGAGAAGTTCGAGATCTAG
AA sequence Show only first row Show all	>Lus10011894 pacid=23169208 polypeptide=Lus10011894 locus=Lus10011894.g ID=Lus10011894.BGIv1.0 annot-version=v1.0 MKGTNTIPSLLLLSLVAFSLTLTVANAELDKGFISQNCSHARYSKNDGVKHSISVVLTQLVSEAVDRITVHNKDYRAHYPSKNSPPLVYGHAYCWRTWGI QSTCRSCLKQAKRMLVRGCPHRAGAAIELEMCSMRYEKFEI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10011894 [exp]	0	1
AT1G29010			unknown protein		Lus10013688 [exp]	1.0	0.9839
					Lus10002921 [exp]	4.9	0.9593
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10011817 [exp]	18.4	0.9685
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10004556 [exp]	27.1	0.9575
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10026398 [exp]	29.5	0.8932
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031145 [exp]	29.7	0.9569
AT5G47540			Mo25 family protein (.1)		Lus10036523 [exp]	32.3	0.9537
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	36.9	0.9503
AT1G04100	AUX_IAA	IAA10	indoleacetic acid-induced prot...		Lus10001501 [exp]	39.4	0.9500
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10030923 [exp]	40.8	0.9489

Compare expression of checked genes

Lus10011894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.