Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29035 71 / 9e-16 Plant self-incompatibility protein S1 family (.1) AT4G16295 69 / 3e-15 SPH1 S-protein homologue 1 (.1) AT3G16970 56 / 2e-10 Plant self-incompatibility protein S1 family (.1) AT2G06090 55 / 5e-10 Plant self-incompatibility protein S1 family (.1) AT5G04047 54 / 9e-10 Plant self-incompatibility protein S1 family (.1) AT4G24975 54 / 2e-09 Plant self-incompatibility protein S1 family (.1) AT5G12070 52 / 8e-09 Plant self-incompatibility protein S1 family (.1) AT3G17080 50 / 2e-08 Plant self-incompatibility protein S1 family (.1) AT5G38435 50 / 2e-08 SPH8 S-protein homologue 8 (.1) AT4G24974 50 / 3e-08 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011892 [exp] 107 / 5e-30 AT4G16295 71 / 3e-16 S-protein homologue 1 (.1) Lus10011897 [exp] 103 / 1e-28 AT2G06090 73 / 2e-17 Plant self-incompatibility protein S1 family (.1) Lus10022826 [exp] 103 / 2e-28 AT4G29035 68 / 5e-15 Plant self-incompatibility protein S1 family (.1) Lus10022824 [exp] 102 / 3e-28 AT5G04347 67 / 9e-15 Plant self-incompatibility protein S1 family (.1) Lus10016171 [exp] 102 / 3e-28 AT5G04347 54 / 7e-10 Plant self-incompatibility protein S1 family (.1) Lus10016350 [exp] 83 / 1e-20 AT2G06090 59 / 1e-11 Plant self-incompatibility protein S1 family (.1) Lus10029390 [exp] 81 / 1e-19 AT4G16295 71 / 5e-16 S-protein homologue 1 (.1) Lus10022830 [exp] 80 / 2e-19 AT2G06090 67 / 6e-15 Plant self-incompatibility protein S1 family (.1) Lus10014630 [exp] 77 / 1e-18 AT5G38435 57 / 1e-11 S-protein homologue 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 92 / 4e-24 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 80 / 3e-19 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.010G008300 [exp] 71 / 5e-16 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.004G199700 [exp] 63 / 7e-13 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1) Potri.006G170200 [exp] 56 / 4e-10 AT5G12060 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) Potri.018G148366 [exp] 52 / 5e-09 AT1G04645 103 / 1e-29 Plant self-incompatibility protein S1 family (.1) Potri.003G201300 [exp] 51 / 1e-08 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1) Potri.018G148630 [exp] 51 / 2e-08 AT1G04645 106 / 3e-30 Plant self-incompatibility protein S1 family (.1) Potri.004G199801 [exp] 49 / 1e-07 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1) Potri.001G053300 [exp] 45 / 3e-06 AT3G24060 82 / 2e-20 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10011895 pacid=23169219 polypeptide=Lus10011895 locus=Lus10011895.g ID=Lus10011895.BGIv1.0 annot-version=v1.0 ATGGAATCAGCATCACAGCTCATCCTCACCACCACCGCCCTAGCAACAATACTCATACTACTCTCGCCATCGTCCGGTGCCGGCGGAAGACCATCCGATG AGGCCGAACCTTCAACTCCCCCGCCGGCGAAAGGACAAGGCATCATATTATCCTACATACACGTACACGTGACCAACGATCTCGGTCCAGATCAGTCGCT GACGGTGCACTGCCAGTCCAAAGATGACGACCTCGGGAGCCACAACCTCGACAACGGGAGCGAGTTCACGTGGCGGTTCAGGCCGAGGATTGCGTTCGGC GAAACGCTGTTCTGGTGCTACGTGGCACCCGTCAGCGAGGAGCTCCATGTACGTTTCGATGCTTACGTGTACAACGACCCTAGCTTTATCCAGTATAAGC ACAACATCTACTGGGAGGTCAGACCTGACGGCGTTTACATGAGGAATCCGGCTCGTGGGAAAGAAGAGTTTAGGCATAAATGGTCCTCTGGAAGAATTGC TGTGTAA
AA sequence Show only first row Show all	>Lus10011895 pacid=23169219 polypeptide=Lus10011895 locus=Lus10011895.g ID=Lus10011895.BGIv1.0 annot-version=v1.0 MESASQLILTTTALATILILLSPSSGAGGRPSDEAEPSTPPPAKGQGIILSYIHVHVTNDLGPDQSLTVHCQSKDDDLGSHNLDNGSEFTWRFRPRIAFG ETLFWCYVAPVSEELHVRFDAYVYNDPSFIQYKHNIYWEVRPDGVYMRNPARGKEEFRHKWSSGRIAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29035			Plant self-incompatibility pro...		Lus10011895 [exp]	0	1
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	3.3	0.9837
AT5G02930			F-box/RNI-like superfamily pro...		Lus10040452 [exp]	4.4	0.8957
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	4.7	0.9837
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10037004 [exp]	5.1	0.8346
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	5.7	0.9837
AT4G35610	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10035994 [exp]	6.6	0.9822
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Lus10043000 [exp]	7.4	0.9821
AT1G70780			unknown protein		Lus10009131 [exp]	7.7	0.8291
AT4G05130		ATENT4	equilibrative nucleoside trans...		Lus10002590 [exp]	8.0	0.9319
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10030505 [exp]	8.1	0.9813

Compare expression of checked genes

Lus10011895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.