Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23990 987 / 0 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) AT2G33210 970 / 0 HSP60-2 heat shock protein 60-2 (.1.2) AT3G13860 813 / 0 HSP60-3A heat shock protein 60-3A (.1) AT5G56500 514 / 3e-177 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2) AT3G13470 499 / 2e-171 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) AT1G55490 494 / 1e-169 Cpn60beta1, LEN1, CPN60B LESION INITIATION 1, chaperonin-60beta1, chaperonin 60 beta (.1.2) AT2G28000 456 / 7e-155 Cpn60alpha1, SLP, CH-CPN60A, CPN60A SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) AT1G26230 451 / 1e-152 Cpn60beta4 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) AT5G18820 370 / 1e-121 Cpn60alpha2, EMB3007 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 76 / 2e-14 TCP-1/cpn60 chaperonin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022832 [exp] 1115 / 0 AT3G23990 980 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011902 [exp] 1094 / 0 AT3G23990 964 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011770 [exp] 998 / 0 AT3G23990 994 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10003791 [exp] 776 / 0 AT3G13860 867 / 0.0 heat shock protein 60-3A (.1) Lus10013404 [exp] 493 / 5e-169 AT3G13470 1037 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10010321 [exp] 494 / 7e-169 AT3G13470 1041 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10037386 [exp] 451 / 5e-153 AT2G28000 960 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10030917 [exp] 431 / 2e-144 AT1G26230 863 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Lus10038352 [exp] 405 / 8e-135 AT5G18820 767 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G252900 [exp] 1016 / 0 AT3G23990 995 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.003G173900 [exp] 1010 / 0 AT3G23990 1016 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.001G054400 [exp] 1000 / 0 AT3G23990 1018 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.003G039475 [exp] 770 / 0 AT3G13860 810 / 0.0 heat shock protein 60-3A (.1) Potri.003G222400 [exp] 503 / 6e-173 AT3G13470 1033 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.001G002500 [exp] 501 / 5e-172 AT3G13470 1030 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.009G009300 [exp] 488 / 3e-167 AT2G28000 919 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.004G213400 [exp] 480 / 4e-164 AT2G28000 964 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.010G135100 [exp] 449 / 5e-152 AT1G26230 813 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Potri.015G122800 [exp] 405 / 4e-135 AT5G18820 821 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10011898 pacid=23169258 polypeptide=Lus10011898 locus=Lus10011898.g ID=Lus10011898.BGIv1.0 annot-version=v1.0 ATGCATCGCTTCGTCTCCGGCCTTGCCTCCAAAGCCAGGTTGGCCAAGGACGCCTCCCAGCAGATCGGGAGTAGAGCGGCTTGGAAAAGGAATTATGCTG CTAAAGATATCAAGTTCGGCGTTGAAGCTCGTGCGTTGATGCTTAGAGGTGTTGAAGAGCTTGCTGATGCTGTGAAAGTGACTATGGGACCTAAGGGGCG AAATGTAGTCTTGGAGCAAAGCTGGGGTGCTCCTAAGGTCACAAAAGATGGTGTTACCGTAGCAAAGAGCATAGAGTTCCAGGATAGAGTGAAAAATATT GGTGCTAGTCTTGTAAAGCAGGTTGCAAACGCTACAAATGATGTGGCGGGGGACGGTACCACATGTGCGACAGTCCTCACTCGTGCTATATTTGCTGAAG GCTGCAAGTCTGTGGCAGCTGGAATGAATGCAATGGATTTGAGGCGTGGGATCTCGATGGCAGTTGATGCTGTTGTCGCAAACTTGAAGAGCAGAGCAAA AATGATCAGCACGTCAGAAGAAATTGCACAGGTTGGAACAATATCTGCCAATGGCGAAAGGGAGATTGGTGAGCTCATAGCAAAGGCCATGGAGAAAGTT GGCAAAGAAGGTGTCATTACCATTGCTGATGGGAAAACTTTGGAAAATGAGTTAGAAGTTGTTGAAGGAATGAAGCTTGACAGAGGATATATCTCTCCTT ATTTTATCACGAATGACAAAAACCAAAAATGTGAACTGGAAGATCCTCTCATTTTAATTCACGAGAAAAAGATCTCAAACTTGAATGCTGTTGTCAAAGT TTTGGAAATTGCATTGAAGAAGCAAAAACCGTTGCTGATTGTTGCTGAAGATCTTGAAAGTGAAGCCTTAGCAACATTGGTTTTGAATAAACTTCGCGCT GGACTGAAGGTTTGTGCTATCAAAGCACCTGGTTTCGGAGAGAATAGGAAGTCTAATTTGCATGACCTTGCCATTCTCACGGGAGGGGAGGTTATCACTG AGGAGCTTGGCATGAATCTTGAAAAGGTTCAACCAGAAATGCTCGGCTCATGCAAGAAGGTAACCATATCTAAGGACGATACTATTATTCTTGATGGTTA CGGTGACAAGAAAGCCATTGAAGAAAGATGCCAACAGTTGAGATCGTCAATTGAGATGAGCACTTCTGATTACGACAAGGAGAAGATACAAGAGCGGCTC GCAAAGCTTTCTGGCGGTGTTGCAGTTCTAAAGATTGGTGGAGCTAGTGAAGCCGAAGTTGGTGAGAAGAAGGACAGGGTTACAGATGCTCTGAATGCCA CAAAAGCTGCCGTGGAGGAAGGCATTGTGCCCGGTGGTGGTGTTGCACTTCTCTACGCATCAAAGGAACTTGACAAACTGAAAACAGCAAACTTCGACCA GAAGATTGGAGTCCAAATCATTCAGAACGCCCTTAAGATGCCAGTACACACAATTGCATGCAACGCAGGAGTAGAAGGTGCAGTAGTTGTTGGCAAGCTA TTGGAGCAAGACGATCTTGAACTTGGCTATGACGCGGCCAAAGGCACATACGTAGACATGGTGAAATCAGGAATCATTGATCCAGTAAAAGTGATCAGAA CAGCATTGGTAGATGCTGCAAGTGTTTCTTCGTTGATGACTACGACGGAAGCCATCATTACGGAACTCCCCAAGGACGAGAAATCAGCCCCAGCAGCACC TGGGATGGGCTACTAA
AA sequence Show only first row Show all	>Lus10011898 pacid=23169258 polypeptide=Lus10011898 locus=Lus10011898.g ID=Lus10011898.BGIv1.0 annot-version=v1.0 MHRFVSGLASKARLAKDASQQIGSRAAWKRNYAAKDIKFGVEARALMLRGVEELADAVKVTMGPKGRNVVLEQSWGAPKVTKDGVTVAKSIEFQDRVKNI GASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVDAVVANLKSRAKMISTSEEIAQVGTISANGEREIGELIAKAMEKV GKEGVITIADGKTLENELEVVEGMKLDRGYISPYFITNDKNQKCELEDPLILIHEKKISNLNAVVKVLEIALKKQKPLLIVAEDLESEALATLVLNKLRA GLKVCAIKAPGFGENRKSNLHDLAILTGGEVITEELGMNLEKVQPEMLGSCKKVTISKDDTIILDGYGDKKAIEERCQQLRSSIEMSTSDYDKEKIQERL AKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLKTANFDQKIGVQIIQNALKMPVHTIACNAGVEGAVVVGKL LEQDDLELGYDAAKGTYVDMVKSGIIDPVKVIRTALVDAASVSSLMTTTEAIITELPKDEKSAPAAPGMGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011898 [exp]	0	1
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10024802 [exp]	1.4	0.9703
AT2G40290			Eukaryotic translation initiat...		Lus10017435 [exp]	3.0	0.9596
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10010163 [exp]	3.7	0.9620
AT5G10920			L-Aspartase-like family protei...		Lus10002606 [exp]	7.2	0.9582
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	9.5	0.9560
AT2G41840			Ribosomal protein S5 family pr...		Lus10030130 [exp]	10.2	0.9560
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10023860 [exp]	13.0	0.9434
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10009338 [exp]	13.4	0.9518
AT3G11940		AML1, ATRPS5A	ARABIDOPSIS MINUTE-LIKE 1, rib...		Lus10008436 [exp]	13.5	0.9537
AT5G11780			unknown protein		Lus10040547 [exp]	13.9	0.8960

Compare expression of checked genes

Lus10011898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.