Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20180 154 / 2e-41 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT1G09530 122 / 2e-29 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT4G28815 106 / 2e-25 bHLH bHLH127 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G28800 108 / 3e-25 bHLH bHLH056 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G28790 103 / 4e-24 bHLH bHLH023 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G00050 99 / 4e-22 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G36930 99 / 4e-22 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67110 94 / 6e-22 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G59060 96 / 7e-21 bHLH PIF5, PIL6 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) AT2G46970 94 / 1e-20 bHLH PIL1, bHLH124 phytochrome interacting factor 3-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022833 [exp] 650 / 0 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10029805 [exp] 113 / 2e-26 AT3G59060 163 / 7e-45 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) Lus10020727 [exp] 114 / 4e-26 AT2G30800 1223 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10024811 [exp] 106 / 5e-25 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10028175 [exp] 97 / 4e-21 AT4G00050 232 / 2e-71 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003471 [exp] 93 / 3e-20 AT4G00050 129 / 8e-34 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10015734 [exp] 92 / 6e-20 AT4G00050 138 / 6e-37 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041592 [exp] 86 / 6e-19 AT4G36930 106 / 3e-28 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018724 [exp] 81 / 5e-17 AT4G36930 126 / 2e-34 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G252800 [exp] 294 / 4e-92 AT2G20180 222 / 7e-66 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Potri.002G055400 [exp] 137 / 2e-34 AT2G43010 177 / 6e-50 phytochrome interacting factor 4 (.1.2) Potri.005G001800 [exp] 123 / 2e-29 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.013G001300 [exp] 122 / 3e-29 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.005G207200 [exp] 119 / 2e-28 AT2G43010 171 / 1e-47 phytochrome interacting factor 4 (.1.2) Potri.014G111400 [exp] 108 / 1e-24 AT2G46970 131 / 3e-33 phytochrome interacting factor 3-like 1 (.1) Potri.005G139700 [exp] 101 / 5e-23 AT4G36930 171 / 2e-49 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G066500 [exp] 101 / 1e-22 AT4G00050 303 / 5e-99 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G124400 [exp] 98 / 3e-22 AT4G36930 154 / 6e-44 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G143300 [exp] 98 / 2e-21 AT4G00050 278 / 2e-89 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10011899 pacid=23169227 polypeptide=Lus10011899 locus=Lus10011899.g ID=Lus10011899.BGIv1.0 annot-version=v1.0 ATGAACCATTACGTTCCTGATTTCGAAATGGACGACGATCATTCCCTCCCTACTCCTTCTTCTTCCAACTTCAATGCCCACAAGAAATCCTCCGCAAGGT CGGAGGACGATATCATGGAGCTGCTCTGGCAGAACGGCCAGGTCGTTGTGCAGAGCCAAACGCAGAGATCTGTGAAGAAGCCTTCGATTGGGAAAGAGAT CCGTTCGTCTTTCCATGAGCATCACCGCGATCCTTCTCCACCGCATCCAGCTCCTCACCTGTTTATGCAGGAGGATGAGATGGCGTCCTGGCTTCATTAT CCGCTCCCGGAGACTAATTTTGACCAGGATTTCTGCGCCGATCTGCTCTATTCTTCTGCTCCTTGCATCACTGGCGTCTCCGCTACGACGACAGCTTCGG CAGCTGCGGCGAACAGCGGTCCGTCTCTTCCCGCTCCTCCTCCGGCTCCTTCGCACGTTCGTTCGTTCGCGAATCAGCATCTAGCGATTCCATCAACGGC TGCGGTGGCGGCGTTGAGGCCGCCGATTCCTCCTCCGCCTAGGAGGCCGGACGCGGTGCAGAATTTCTCGCTGTTTTCTAGGCATAGAGGAGTGGCGGCG GCGGCGAGGGGATCTATGGCGGCTGGATCAGAGCAGTCGAATTCGAAGTCGGTGGTGAAGGAGTCCACGGTTGTGGACTCGAGCGGGACTCCGGCGATGT TGCGGCAGAGCTCTAGAGTCTCCGAGGCTGCTACCGTAGCCGTCGGATCGAGCTGCGAGAATGTTCACGGGAACGGGGGGGGGGGGGGATTTTTTGCTGC TCAGCGTAACGAACAGCCAAAGTTGCTGAGGTTTCTCGCTGATTTACGGCGCATGACACGGGATGCCGAGTTCGAATCTGCTGAAGAGAAAAAGCAAGCT CGCGGGTCAACATCCACGAAACGGTCTCGTGCAGCCGAGGTTCACAACCTCTCAGAAAGGAGGCGTAGAGACCGGATAAATGAAAAGATGAAGGCCTTAC AAGAACTAATACCACGTTGCAATAAGTCAGACAAAGCTTCTATGCTCGATGAAGCGATTGAATACCTGAAATCACTTCAGTTGCAAGTACAGATGATGTC CATGGGATGCAGCATGGTCCCTATGATGTTTCCGGGCGTCCAGCAGTACATGCCACCGATGGGGATGGGAATGGGGATGGGGATGGGGATGGGAATGGGC ATGGGAATCGACATGGGAATGAACCGGCCAATGATGCCATTCCCCAATGTTTTGGCTGGTGCGCCCTTGCAGCCAGCTGCTCATTTGGGCCAGAGGTTCC CTGTGCCAGGCTTCCAAATGCCACCTGTGATGCCTCCTCCTGATCCGTCCCGAGTTCAAGCTGCAAACCAGCCGGATCTTATGATGAGCGCACAGGGAGG CGCACCAACCATGGGCCAACAACAAAGACCGCCGAGTTTTCCTGATCCCTATCAACAATTCCTTGCTCTCCACCAGATGCAAATGCCAATGCAACAGAAC CAACCAATGCCACATCCCAGTATGAACAAGCGCAGTTCAAGCCCAGGAGCTGAACATGGCGATGGTCATCAATCCGGCGAGGAACAAAGGATCCGTACAT ACCCGCGCTTCACCATTAACAACAACGGTGGAGATCTCCGACGATTTGCAGGCTCCCAAGTTCCGTTCTCCATGCCTGTAAGAAGTTTTTTGTAG
AA sequence Show only first row Show all	>Lus10011899 pacid=23169227 polypeptide=Lus10011899 locus=Lus10011899.g ID=Lus10011899.BGIv1.0 annot-version=v1.0 MNHYVPDFEMDDDHSLPTPSSSNFNAHKKSSARSEDDIMELLWQNGQVVVQSQTQRSVKKPSIGKEIRSSFHEHHRDPSPPHPAPHLFMQEDEMASWLHY PLPETNFDQDFCADLLYSSAPCITGVSATTTASAAAANSGPSLPAPPPAPSHVRSFANQHLAIPSTAAVAALRPPIPPPPRRPDAVQNFSLFSRHRGVAA AARGSMAAGSEQSNSKSVVKESTVVDSSGTPAMLRQSSRVSEAATVAVGSSCENVHGNGGGGGFFAAQRNEQPKLLRFLADLRRMTRDAEFESAEEKKQA RGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPMMFPGVQQYMPPMGMGMGMGMGMGMG MGIDMGMNRPMMPFPNVLAGAPLQPAAHLGQRFPVPGFQMPPVMPPPDPSRVQAANQPDLMMSAQGGAPTMGQQQRPPSFPDPYQQFLALHQMQMPMQQN QPMPHPSMNKRSSSPGAEHGDGHQSGEEQRIRTYPRFTINNNGGDLRRFAGSQVPFSMPVRSFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10011899 [exp]	0	1
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10022833 [exp]	1.0	0.9512
AT3G50120			Plant protein of unknown funct...		Lus10011501 [exp]	1.4	0.9063
AT1G52190			Major facilitator superfamily ...		Lus10035860 [exp]	2.4	0.8851
AT1G61350			ARM repeat superfamily protein...		Lus10002598 [exp]	2.8	0.8842
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031882 [exp]	3.9	0.8528
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10025805 [exp]	4.0	0.8408
AT5G48460			Actin binding Calponin homolog...		Lus10025865 [exp]	4.9	0.8221
AT2G17550			unknown protein		Lus10035987 [exp]	5.2	0.8406
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10038190 [exp]	5.3	0.8183
AT1G25250	C2H2ZnF	ATIDD16	indeterminate(ID)-domain 16 (....		Lus10031314 [exp]	8.1	0.8289

Compare expression of checked genes

Lus10011899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.