Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66520 282 / 3e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33760 258 / 1e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G33680 261 / 3e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77170 251 / 3e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56310 253 / 6e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08305 250 / 5e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62890 250 / 1e-76 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 246 / 8e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 244 / 3e-74 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G59720 245 / 4e-74 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027389 [exp] 272 / 8e-86 AT5G66520 393 / 7e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 275 / 2e-85 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025490 [exp] 271 / 3e-84 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 268 / 6e-83 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 268 / 1e-82 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040504 [exp] 265 / 2e-81 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002024 [exp] 260 / 2e-81 AT5G56310 344 / 6e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005987 [exp] 259 / 2e-80 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013319 [exp] 258 / 2e-79 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G132100 [exp] 520 / 0 AT5G66520 249 / 4e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G043400 [exp] 284 / 2e-89 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G252400 [exp] 280 / 5e-89 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.007G073100 [exp] 280 / 2e-88 AT5G08305 600 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G052300 [exp] 278 / 4e-87 AT2G33760 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G258766 [exp] 275 / 3e-86 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G237000 [exp] 275 / 9e-86 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G223900 [exp] 272 / 2e-85 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G168800 [exp] 272 / 8e-85 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G231200 [exp] 271 / 2e-84 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10011900 pacid=23169263 polypeptide=Lus10011900 locus=Lus10011900.g ID=Lus10011900.BGIv1.0 annot-version=v1.0 ATGTCAGCAACATACCAACAATTGACTTCTTGTGTAACCAGCAAGATCGTCAATCTCTTGACCAACTGCTGCTACGTACAAACCCATCTCCACCAAATCC AAGCGCACCTCATCCTCCAATTCCTCCACTCCGACACCACCGTCGCCCTCCACTACATCACCGCCGCCGAACGCCTCCGCCTCCTCCTCCCATCTCTCCC CCACCTCTTCCTATCCCACCGCCACCACAAACCCCATGTCTTCACCTGCAATACTCTCATCAAAGCCTTCGCCTCCGCCGAAGATCAAAACCCTCACCAA GTTCCGCTCTTGGTCTACACCCACATGCTCAGACGCTCTGTTCGTCCCAACAACTACACTTTCCCTTTCCTCCTCAAGTCACTTTCCATCTCCCGCCGGT TCGATCAAGGTCAGTGCGTGCATTCCCACTTAGTCAAGCTTGGTCATTTGACGGACATCTATGTCTTGAATTCGCTGCTCCATTTGTATGCATCGTCGCG TGGGAGAATGAAACTTTGCCGCCAGGTGTTCGACGAAATGTCTGAAAGAGACGTGGTATCCTGGACTGTCTTGATTACCGGGTATAGAAATGATTTTAAG TACGACGATGCTTTGATTGCTTTCGAGACGATGCAGTACGCAGGATTGGTCCCGAATCCTGTCACGATGGTGAATGCTTTAGCGGCTTGCGGTGGATGTG GAGCCATTGAGATGGGGATTTGGATACATGACTTCATAACCAGGAATGGATGGGAATTGGATGTAACTTTGGGTACTGCTCTAATGGATATGTATTTGAA ATGTGGGAGAGTTCATGAAGGGAAGAAAGTGTTCATAGCCATGAAAAGTAAGAACCTTTACACTTGGAATGTGTTGATCAAAGGACTCGGTCATGCCAAG TGCGGTAGTGAAGCCATTGAATGGTTTCTTAAGATGGGACGAGAGGGATTGGAAATTGACCAGATTACTTTGGTTAATGTTCTCAGTGCTTGCAGCCATT CGGGGCTCGTGGAAGTAGGGAAGCAGATCTTCGGATCGTTGGTTAACGGAGAGTACGGATTCTCTCCAGGGATAAAGCACTATGCTTGTATGGTCGATAT CTTGTCTCGTGCGGGGTGTTTGCACGAGGCTTTGAAATTCATCGAGGAGGGAATGGAGGGGTTTGAGGCGACAAAATCGATGTGGGGGTCTTTACTGAAT GGTTGTAGAGAGTTTGGGGATTTGGAACTGGCTAAGTTTGTAGGTGAGAAGCTTGTGGAGATGGAGCCGGGGAATGGTGCTTACTATGTTGTTCTGTGTA AGGTGTATGGAGAGATGGGGAGATGGGATGATGCTGCTCGAGTTAGGGATTTGATGAGAGTGAAGGGGATTAAGAAGGATTCGGGGAGTAGCTCGATGAA GTTAGAAAGAGCGTATTGA
AA sequence Show only first row Show all	>Lus10011900 pacid=23169263 polypeptide=Lus10011900 locus=Lus10011900.g ID=Lus10011900.BGIv1.0 annot-version=v1.0 MSATYQQLTSCVTSKIVNLLTNCCYVQTHLHQIQAHLILQFLHSDTTVALHYITAAERLRLLLPSLPHLFLSHRHHKPHVFTCNTLIKAFASAEDQNPHQ VPLLVYTHMLRRSVRPNNYTFPFLLKSLSISRRFDQGQCVHSHLVKLGHLTDIYVLNSLLHLYASSRGRMKLCRQVFDEMSERDVVSWTVLITGYRNDFK YDDALIAFETMQYAGLVPNPVTMVNALAACGGCGAIEMGIWIHDFITRNGWELDVTLGTALMDMYLKCGRVHEGKKVFIAMKSKNLYTWNVLIKGLGHAK CGSEAIEWFLKMGREGLEIDQITLVNVLSACSHSGLVEVGKQIFGSLVNGEYGFSPGIKHYACMVDILSRAGCLHEALKFIEEGMEGFEATKSMWGSLLN GCREFGDLELAKFVGEKLVEMEPGNGAYYVVLCKVYGEMGRWDDAARVRDLMRVKGIKKDSGSSSMKLERAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10011900 [exp]	0	1
AT1G74900		OTP43	organelle transcript processin...		Lus10042307 [exp]	5.7	0.7691
AT1G62260		MEF9	mitochondrial editing factor 9...		Lus10012514 [exp]	6.2	0.7752
AT5G51410			LUC7 N_terminus domain-contain...		Lus10038924 [exp]	10.2	0.7383
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10009070 [exp]	17.1	0.7651
AT1G31240			Bromodomain transcription fact...		Lus10040612 [exp]	17.3	0.6543
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10002382 [exp]	17.9	0.7457
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10022758 [exp]	20.0	0.7280
AT1G15710			prephenate dehydrogenase famil...		Lus10011483 [exp]	20.9	0.7715
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10004373 [exp]	22.8	0.7581
AT2G23060			Acyl-CoA N-acyltransferases (N...		Lus10002468 [exp]	26.8	0.6827

Compare expression of checked genes

Lus10011900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.