Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20190 95 / 4e-22 ATCLASP CLIP-associated protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022839 [exp] 125 / 5e-33 AT2G20190 1191 / 0.0 CLIP-associated protein (.1) Lus10011907 [exp] 109 / 3e-27 AT2G20190 2090 / 0.0 CLIP-associated protein (.1) Lus10022838 [exp] 108 / 4e-27 AT2G20190 745 / 0.0 CLIP-associated protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G253200 [exp] 99 / 1e-23 AT2G20190 2103 / 0.0 CLIP-associated protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011904 pacid=23169266 polypeptide=Lus10011904 locus=Lus10011904.g ID=Lus10011904.BGIv1.0 annot-version=v1.0 ATGAATACTGAACCCTTGGCAGTGTCTGAAGGCTATGCACACGGTCCTGATCCTCTCTCTGAAATGTACCTGAACAATTTAAAGCCTGCTGCTATAAAAG TCAATTCTGTTGGAGACCGTGGTCCAAGTATTCCTCAAATTCTTCATGTAGTGAGCTTTGCGACCATGATCTCACCCGAAATCTTGAAACACAAGGTTAT CGTTCCTTCGCTGGTAACTGAAGACGAGAAAACTCTAGTAACTTCCATAAGCTGTTTGACAAAGCTCGTTGGCCAGCTCTCCGAGGAGGAGCTAATGACT CAGCTGTCCTCATTTTTGCCTGCATTGTTCAAAGCTTTCAACAACCAGAGTGCTGATGTTCGCAAGAAAAACTTGTCAGCATCTCTTCGAGATGGAAGTA CATCCAGCTCATATGCACCTCAAGCGTCTGCTTCTTCAAATTTATCTGGATATGGGACCTCTGCCGTTGTTGCAATGGACAGAACCTCAAGCATGCCGTA TGGGCTGCTACTGTCACAGGCGAAGCCTGCTGGCAAAGGCACTGAACGAAGTCTTGAAAGTATATTGCATGCAAGTAAACAAAAGGTCAGTATTGAAAGC ATGGTTAGAGGGCTCGAGATATCTGAGAAACAAAATCCCATGTTCTTGGACCGCACGGTATCTGGAGAACTCGACTGA
AA sequence Show only first row Show all	>Lus10011904 pacid=23169266 polypeptide=Lus10011904 locus=Lus10011904.g ID=Lus10011904.BGIv1.0 annot-version=v1.0 MNTEPLAVSEGYAHGPDPLSEMYLNNLKPAAIKVNSVGDRGPSIPQILHVVSFATMISPEILKHKVIVPSLVTEDEKTLVTSISCLTKLVGQLSEEELMT QLSSFLPALFKAFNNQSADVRKKNLSASLRDGSTSSSYAPQASASSNLSGYGTSAVVAMDRTSSMPYGLLLSQAKPAGKGTERSLESILHASKQKVSIES MVRGLEISEKQNPMFLDRTVSGELD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10011904 [exp]	0	1
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Lus10019318 [exp]	13.6	0.6827
AT4G29660		EMB2752	embryo defective 2752 (.1)		Lus10032908 [exp]	200.9	0.5374
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10036312 [exp]	232.0	0.5375

Compare expression of checked genes

Lus10011904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.