Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15880 887 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT1G80490 865 / 0 TPR1 TOPLESS-related 1 (.1.2) AT1G15750 850 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G16830 756 / 0 TPR2 TOPLESS-related 2 (.1) AT5G27030 740 / 0 TPR3 TOPLESS-related 3 (.1.2) AT2G25420 226 / 7e-63 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 66 / 3e-11 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 57 / 5e-08 PRL1 pleiotropic regulatory locus 1 (.1) AT1G73720 56 / 6e-08 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT3G16650 56 / 7e-08 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043258 [exp] 1063 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10038094 [exp] 1011 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10006650 [exp] 996 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10019401 [exp] 912 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011481 [exp] 882 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10023119 [exp] 882 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10020668 [exp] 748 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10029876 [exp] 746 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10001951 [exp] 595 / 0 AT1G15750 1007 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G128000 [exp] 1002 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.006G066800 [exp] 992 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.003G030000 [exp] 877 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.001G200500 [exp] 863 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.006G257900 [exp] 781 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.013G081300 [exp] 780 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.018G023900 [exp] 778 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2) Potri.005G021700 [exp] 755 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.013G012100 [exp] 743 / 0 AT5G27030 1698 / 0.0 TOPLESS-related 3 (.1.2) Potri.018G023800 [exp] 693 / 0 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10011905 pacid=23169233 polypeptide=Lus10011905 locus=Lus10011905.g ID=Lus10011905.BGIv1.0 annot-version=v1.0 ATGTCTTCGCCCAGCAGGAAATCTGATGTCCCTAATCCATCAATTTCTGCTACACCCAGGTGTTCGAATGGATGTGTTGATATAGATGGCCTGTTGCAGC ATTATAGGGCCAACAAGTCAGTTGTGGATTATGCAACAGCATATGAGCGTTTTTCAAAAAGATCAAGAGTAATCGAGGAGCCTAAAAAAGAGCAGGTCTT TTGGACTCTGTCTACCGGATATGTTGATCTGCCTACGAATCTGTTTATGACTTTAAATCAAGGCTCAGCAGTTAAGAGTATGGATTTTCATCCATTGCAT TTGCAGCAGATACTACTTCTTGTTGGAACAAACACCGGTGATGTTATGGTATGGCAGCTGGGTAACCGTGAGAGGATTGCTTTAAAGAATTTTAAGGTTT GGGACCTTGGAGCTTGTTCGGTCAGGTTACAGGCATCTCTTGCTGATGATTATACAGCATCAGTGAACCGCGTCATGTGGAGCCCAGATGGAACTCTATT TGGTGTTGCTTACTCTAAGCACATACTTCATATCTATTCATACCATGGCGGGGATGATATAAGAAATCACCTTGAGATCGAAGCTCATGTTGGGAGTGTT AATGATCTTGCTTTCTCGTATCCCAACGAGCAACTGTGTGTGGTCACTTGTGGAGACGACAAGTTGATTAAGGTTTGGGATGCAGTTACTGGCAGTATTA AGTTCACTTTTGAAGGCCATGAAGCACCTGTATATTCAGTGTGCTCAGATGACAAAGAAACTAATCAGTCTATATTTTCAGCTGCAACTGACGGAAAGAT TAAAGAATGGTTGTATGATACCAAGGGATCCAGAGCTGAATTTTTTGCAACAGCAGATTCATCGACCACTATGGCATATAGTCGTGATGGAACGAGATTG TTCTCATGCGGGGCAAACAAGGATGGAAAATCACATTTGGTTGAACGGAATATAAGTAGTGGTCAAGTTACGAAGACATATACTGGTCTTGGGAAGCGAT CAGTTGGAGTTGTACAATTTGATACCAGCACTAAGAAGCAGATATTGGCTGTTGGTGATGAGTTCATGGTCAAATTCTGGCACATGAACAATCATAGCTT ATTAACAATGATAGATGCACGTGGTGGACTGCCGGCCTCTCCTTGTATAAGATTCAATAAGGAAGCAGTACTCTTAGCTGTCTCAACCAGTGACAATTGT GTTAAAGTTCTTGCCAATAATGATGGGATTAGTCTGTTACGGACTGTTGGAAATCGTGAATTTGATGCTGCCCGTGTCTTTATTGCTGCTACTATGAAGG CCCGTTCAGTGCCAATTGCTGCTCCACCTTCTCCAATTCCACCCATGATTAGTGGAAAACCTAGAATTTCTGATGAATTAATGGAAATAAACGAATCGTC ACAATGTCGATCTCTGAGGCTTCATCACAATTTAACTGCAGTAAGGGTGGCCAGATTGATATACATGGATATTGGAATGAGTATATTAGCATTAGCATCT AATGGTGTTCATAAGGCCTGGAAATGGAAATTTACCAATATAAACATTACCGGAAAGGCTACTGCTAGCATAGCACCACAACTTTGTGTACCATTGAATG GGGTATCGATGGCGAATGAGAACCCGGACGAAGATGGTGCTTCATGCTTTGCCCTATCGAACAACGATCATTTTTTAATGTCTGCTTCAGGAGGAAAGAT ATCTCTTTACGATATGCAAACAGCTGAGACGATGACAACATTGGCGGCACCACCACCAGCTGCAACATTCATGGCATTTCACCCTCTACACAATGATATC ATTGCCATAGGGATGGACGATTCTTCCATTCAAATTTATAATTTCAAGGAAACAGACAATCCCTTCGAAGCACCTTCCGTCTCGCCGGTTGAAAATAAGT TGATCGGTCATCGGGGAAGAATCACCGGCCTCGCCTTCTCCAACAAGCTAAATATACTCGTGTCTTCTGGAGCCGACTCTCAGTTATGCGTGTGGAATAT AGATGGATGGGAAAAGCAGGTTAGTAAGATGTTGCAGATTCCGTCCGGGCGTCCTGCCTCGGATACCCGTGTTCAGTTCCATATCGATCAGACACATCTG CTTGCGGTTCACGAGACACAGATAGCACTGTACGATGCTCCGAAACTAGAATGTCTCGGGCAGTGGCTCCCACTGCGAGATGGGAATCCTCCCATCACGG ATGCCACATATTCGTGTGATAGCCAATCGATATATGTTGGTTTTGAAGATGGAAGTGTGGGTGTTATTACAGCTCACACTCTCACACTGCGATGCACAAT AGGATCCAATGCGTACTTACCTACTCCTAACCCAAGCTTGAGGGTGTATCCCCTAGTCATTGCAGCGCACCCATCGGAACCCAACCAATTTGCATTGGGA TTAACGGATGGCGGAGTTTACGTGGTAGAGCCGTTAGAATCACAAGGAAAATGGGGCACATCACCTCCAGTTGAGAATGCTGCTGGACGTCGCACTTGA
AA sequence Show only first row Show all	>Lus10011905 pacid=23169233 polypeptide=Lus10011905 locus=Lus10011905.g ID=Lus10011905.BGIv1.0 annot-version=v1.0 MSSPSRKSDVPNPSISATPRCSNGCVDIDGLLQHYRANKSVVDYATAYERFSKRSRVIEEPKKEQVFWTLSTGYVDLPTNLFMTLNQGSAVKSMDFHPLH LQQILLLVGTNTGDVMVWQLGNRERIALKNFKVWDLGACSVRLQASLADDYTASVNRVMWSPDGTLFGVAYSKHILHIYSYHGGDDIRNHLEIEAHVGSV NDLAFSYPNEQLCVVTCGDDKLIKVWDAVTGSIKFTFEGHEAPVYSVCSDDKETNQSIFSAATDGKIKEWLYDTKGSRAEFFATADSSTTMAYSRDGTRL FSCGANKDGKSHLVERNISSGQVTKTYTGLGKRSVGVVQFDTSTKKQILAVGDEFMVKFWHMNNHSLLTMIDARGGLPASPCIRFNKEAVLLAVSTSDNC VKVLANNDGISLLRTVGNREFDAARVFIAATMKARSVPIAAPPSPIPPMISGKPRISDELMEINESSQCRSLRLHHNLTAVRVARLIYMDIGMSILALAS NGVHKAWKWKFTNINITGKATASIAPQLCVPLNGVSMANENPDEDGASCFALSNNDHFLMSASGGKISLYDMQTAETMTTLAAPPPAATFMAFHPLHNDI IAIGMDDSSIQIYNFKETDNPFEAPSVSPVENKLIGHRGRITGLAFSNKLNILVSSGADSQLCVWNIDGWEKQVSKMLQIPSGRPASDTRVQFHIDQTHL LAVHETQIALYDAPKLECLGQWLPLRDGNPPITDATYSCDSQSIYVGFEDGSVGVITAHTLTLRCTIGSNAYLPTPNPSLRVYPLVIAAHPSEPNQFALG LTDGGVYVVEPLESQGKWGTSPPVENAAGRRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Lus10011905 [exp]	0	1
					Lus10042671 [exp]	1.4	0.7487
AT2G42080			Chaperone DnaJ-domain superfam...		Lus10029287 [exp]	9.5	0.5760
AT2G26550		HO2	heme oxygenase 2 (.1.2.3)		Lus10042666 [exp]	19.5	0.6405
AT3G09320			DHHC-type zinc finger family p...		Lus10024377 [exp]	84.1	0.5493
AT1G71090			Auxin efflux carrier family pr...		Lus10002280 [exp]	120.0	0.5319

Compare expression of checked genes

Lus10011905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.