Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63090 60 / 2e-11 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT3G26660 54 / 2e-09 AS2 LBD24 LOB domain-containing protein 24 (.1) AT3G26620 54 / 2e-09 AS2 LBD23 LOB domain-containing protein 23 (.1) AT2G30340 54 / 7e-09 AS2 LBD13 LOB domain-containing protein 13 (.1) AT3G47870 54 / 1e-08 AS2 ASL29, SCP, LBD27 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) AT4G22700 52 / 2e-08 AS2 LBD32 LOB domain-containing protein 32 (.1) AT4G00210 50 / 1e-07 AS2 LBD31 LOB domain-containing protein 31 (.1) AT5G66870 50 / 1e-07 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) AT1G65620 49 / 3e-07 AS2 AS2 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT1G36000 43 / 1e-05 AS2 LBD5 LOB domain-containing protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028132 [exp] 71 / 9e-15 AT4G18220 361 / 4e-123 Drug/metabolite transporter superfamily protein (.1) Lus10023591 [exp] 57 / 1e-10 AT3G26660 52 / 5e-09 LOB domain-containing protein 24 (.1) Lus10005284 [exp] 58 / 2e-10 AT2G30130 99 / 1e-25 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10039940 [exp] 57 / 3e-10 AT5G63090 236 / 5e-80 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10027676 [exp] 57 / 4e-10 AT5G63090 233 / 8e-79 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10036130 [exp] 57 / 5e-10 AT2G28500 207 / 1e-67 LOB domain-containing protein 11 (.1) Lus10009567 [exp] 55 / 5e-10 AT3G26660 61 / 5e-13 LOB domain-containing protein 24 (.1) Lus10011645 [exp] 57 / 7e-10 AT2G28500 205 / 4e-67 LOB domain-containing protein 11 (.1) Lus10016769 [exp] 57 / 8e-10 AT5G66870 222 / 3e-71 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G083500 [exp] 61 / 7e-12 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.015G082200 [exp] 59 / 3e-11 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.013G156200 [exp] 56 / 8e-10 AT2G40470 207 / 2e-67 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) Potri.007G039500 [exp] 56 / 1e-09 AT5G66870 256 / 1e-84 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Potri.013G081200 [exp] 53 / 1e-08 AT2G40470 249 / 2e-84 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) Potri.014G167100 [exp] 49 / 1e-07 AT1G07900 144 / 7e-44 LOB domain-containing protein 1 (.1) Potri.010G177100 [exp] 50 / 2e-07 AT1G65620 288 / 5e-100 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.008G079800 [exp] 49 / 2e-07 AT1G65620 263 / 7e-90 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.015G135900 [exp] 48 / 2e-07 AT3G26660 165 / 2e-53 LOB domain-containing protein 24 (.1) Potri.015G066700 [exp] 48 / 8e-07 AT3G47870 191 / 2e-59 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10011906 pacid=23169244 polypeptide=Lus10011906 locus=Lus10011906.g ID=Lus10011906.BGIv1.0 annot-version=v1.0 ATGGTAACTTCATTCACCGATGAGGTACCAATCCCACTGGTCAATGGCAGGGTTGAGGTACCAGTCCCACCAAAAAGCAGCGGCATTGATGAGGGGAGTA TTTCAATGACCATGGAAGTAAGCAGGGAGATGACTGAAGATTATGGGAGTTGCAGAGCGACCGGTTGTAGTGCTGTATGGAACAACGCTAACGATGTTGA AAAGGTGGGGAATGCAAGGTGCGCCAAGTGTCATTGGAGCCGGAGGCCCAACTGTCCCGCCGGCTGCCCCTACTACGACTACTTCCCACCCAACTCGGAA GCTTTCAATAAGATTCGTCGAGTCTTCGGGGGAAAATTTGTGGAGACGATCTACCAGAAACTCCGCTACCCTGAAGACGCCTTTGTCGCCTTCCGGGCAT TGGAGCGGGACGCTGATGCTTGGATAAGAAACCCCGTGATGGGTCCCACAGGAACCGTGACGGAGCTCCAACATCAAATCCAGTTCCTTCAAGACCGGAT TCGAATACTTGAGGGGCAGCCGCCGGTGTAG
AA sequence Show only first row Show all	>Lus10011906 pacid=23169244 polypeptide=Lus10011906 locus=Lus10011906.g ID=Lus10011906.BGIv1.0 annot-version=v1.0 MVTSFTDEVPIPLVNGRVEVPVPPKSSGIDEGSISMTMEVSREMTEDYGSCRATGCSAVWNNANDVEKVGNARCAKCHWSRRPNCPAGCPYYDYFPPNSE AFNKIRRVFGGKFVETIYQKLRYPEDAFVAFRALERDADAWIRNPVMGPTGTVTELQHQIQFLQDRIRILEGQPPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Lus10011906 [exp]	0	1
					Lus10015654 [exp]	1.7	0.9920
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10029878 [exp]	2.0	0.9945
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014528 [exp]	2.0	0.9936
					Lus10007549 [exp]	2.0	0.9913
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10011333 [exp]	4.2	0.9893
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Lus10034744 [exp]	5.0	0.9752
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010693 [exp]	5.0	0.9896
AT5G67460			O-Glycosyl hydrolases family 1...		Lus10002466 [exp]	6.3	0.9858
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10009457 [exp]	8.1	0.9824
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10005537 [exp]	10.6	0.9877

Compare expression of checked genes

Lus10011906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.