Plant FIBer expression Database

Lus10011909 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G20210 417 / 3e-139 RNI-like superfamily protein (.1)
AT1G10510 43 / 0.0005 EMB2004 embryo defective 2004, RNI-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022840
[exp]
644 / 0 AT2G20210 218 / 2e-64 RNI-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G194800
[exp]
574 / 0 AT2G20210 527 / 0.0 RNI-like superfamily protein (.1)
Potri.008G193700
[exp]
47 / 3e-05 AT1G10510 813 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0022 LRR PF00560 LRR_1 Leucine Rich Repeat
Representative CDS sequence
>Lus10011909 pacid=23169195 polypeptide=Lus10011909 locus=Lus10011909.g ID=Lus10011909.BGIv1.0 annot-version=v1.0
ATGGCACGACCTCCATCTTTGGTATCATTGATATTGGAAGTAATCAAACAACAACTTGTCCGTGGTGAAGAAGATGTTTGCATTCATGAGCTTCCGGACC
ACTTGCTTGAGGCCTTGATCGCGAAGCTACCTCCTGTGGGATTGCAGGCTTTGGAACATTATATACCATTTGAGGAGTCTGGCGACTATGAGCTTGTCAG
TGAGACAAATGGACGAAAGCGACGGAGGTCCAGAAGGTTCGATAAAGGCTGGGATGCATTGTTCAAGCTGCGGTGGCCGACACTCATGGACCGGATTCAG
GCCGATGACTGGAAGCAGATTTGTTTTGATGAAGCAGTGGCATCGGCTGTCCTCCCTTCATTTGATGGATGTATTGCTGATCTTAGAATTTCAGAAAGAA
CCCTGAAATGTATCGGATATGAAGGTCTTATGGACAATCTAGAAATTTTGAAGTTATCATACCACTGTCGGCAATTTGGAGCTCATGCACGATCGCTGCG
ACTTCAGAGTGTTTTTTGTGGTGAAGAAACTTGTGAATTATTACAGGACAGTAAATTGCAATCGCTAGTAATCCGATGGATCAGAACCGAGGAACAAGTT
CGTGGATTGTGCAGCCTGCTGATACAAAATAGAGAAACATTAACTTCCGTTCAGTTTATCCACAGCAACTTGTCATCAACATTATTCAGTGCACTATGTT
TTGCCATAAACAGAACAAAGATTCAGGAGTTCACCACCACCATATCCAGCTTTACTGAAAGGAATGCAGTTTCCATTCCTCTGGGGCTCAAGTCGTTCCT
TTCGTCGGAAAGGTCCTTGTCTTTATTAAAACTCCACGACGACCGTCTCGACCGTGGATTTGCCTCATCGCTTTTTTACACCCTGATTGATGGTTGCTCC
ACTCTTTCAACACTCGACCTTTCTGACAACAATATAGCTGGATGGCTGTCTAATTTTAACCGGAGGGACTTCAACAAATCTCAATCATCTTTGGGAGTAG
ACATATTTCCGCAATCTCTACGGGTTCTTAACATAAGGGGAAATAATCTTCAAGAGGAAGACATGGTATGCCTTAGACAATTACTGATGTGCATGCCAAA
CTTGGAGGTCCTTGACATAAGCGACAATCCCATTGAGGATGATGGAGTCAGATGTTTAGTCCCTTATTTCACAGAGGCCTCCAAAGGATGCTTCGCCTTG
GTCGATTTGAAGTTAGATAATTGTGAGCTTTCTTGCAATGGAGCGATAGAACTTTTGGATACCCTTTCGACTTTGAAGAAACCTCTACACTCCCTATCAA
TAGCGGACAATAGTCTCGGCAGCCGAATGGCAGAAACATTCGGAAAGTTCTTGGAAACAAATGTGAGAGTGCTGAACATTGAAGGCATCGGATTGGGCTC
AGTTGGCTTCCAGGAGCTGCAGAAAAGGATTACGACAAAGCTAAATCTTGCTGACATCAATATAAGCAAAAACCGTGGCGGCCTAGAAACTGCGAGATTC
GTATGCAATCTGTTATCATTTGCTCCAGATATAACGAGGATAAATGCAGCGTATAATCTTATGCAGTCAGAATCATTATCCTTATTATGCTCTGCCCTGA
AGGTGACACCAGGTAGGCTCGAGTGTTTGGATTTGACTGGGAATACATGGGACTACCATCCTGATCACGATTCGATCCTCTCGAAGTTCCAACACAACGG
CCGGCCCATCTTGATTCTTCCATCACCACATGCTCGTAAGGTTGTTCCCCATGATGACGATCCATAA
AA sequence
>Lus10011909 pacid=23169195 polypeptide=Lus10011909 locus=Lus10011909.g ID=Lus10011909.BGIv1.0 annot-version=v1.0
MARPPSLVSLILEVIKQQLVRGEEDVCIHELPDHLLEALIAKLPPVGLQALEHYIPFEESGDYELVSETNGRKRRRSRRFDKGWDALFKLRWPTLMDRIQ
ADDWKQICFDEAVASAVLPSFDGCIADLRISERTLKCIGYEGLMDNLEILKLSYHCRQFGAHARSLRLQSVFCGEETCELLQDSKLQSLVIRWIRTEEQV
RGLCSLLIQNRETLTSVQFIHSNLSSTLFSALCFAINRTKIQEFTTTISSFTERNAVSIPLGLKSFLSSERSLSLLKLHDDRLDRGFASSLFYTLIDGCS
TLSTLDLSDNNIAGWLSNFNRRDFNKSQSSLGVDIFPQSLRVLNIRGNNLQEEDMVCLRQLLMCMPNLEVLDISDNPIEDDGVRCLVPYFTEASKGCFAL
VDLKLDNCELSCNGAIELLDTLSTLKKPLHSLSIADNSLGSRMAETFGKFLETNVRVLNIEGIGLGSVGFQELQKRITTKLNLADINISKNRGGLETARF
VCNLLSFAPDITRINAAYNLMQSESLSLLCSALKVTPGRLECLDLTGNTWDYHPDHDSILSKFQHNGRPILILPSPHARKVVPHDDDP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G20210 RNI-like superfamily protein (... Lus10011909
[exp]
0 1
AT2G42160 BRIZ1 BRAP2 RING ZnF UBP domain-cont... Lus10006651
[exp]
1.0 0.9310
AT4G32850 PAP(IV), PAP(IV... poly\(A\) polymerase IV, poly\... Lus10006029
[exp]
1.4 0.9145
AT4G09140 ATMLH1 ARABIDOPSIS THALIANA MUTL-HOMO... Lus10033274
[exp]
2.0 0.9096
AT3G61960 Protein kinase superfamily pro... Lus10005135
[exp]
2.2 0.9010
AT1G55250 HUB2, HISTONEMO... histone mono-ubiquitination 2 ... Lus10024057
[exp]
3.0 0.9112
AT1G32810 RING/FYVE/PHD zinc finger supe... Lus10001662
[exp]
5.1 0.8826
AT5G17570 TatD related DNase (.1) Lus10017234
[exp]
5.6 0.8613
AT4G24970 Histidine kinase-, DNA gyrase ... Lus10022438
[exp]
5.8 0.8799
AT3G21480 BRCT domain-containing DNA rep... Lus10038633
[exp]
6.5 0.8950
AT3G45630 RNA binding (RRM/RBD/RNP motif... Lus10018126
[exp]
6.9 0.8923

Lus10011909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.