Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20230 222 / 2e-72 Tetraspanin family protein (.1) AT4G28770 207 / 3e-66 Tetraspanin family protein (.1.2) AT2G20740 115 / 3e-31 Tetraspanin family protein (.1.2.3) AT1G32400 75 / 1e-15 TOM2A tobamovirus multiplication 2A (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022841 [exp] 380 / 2e-134 AT2G20230 294 / 2e-100 Tetraspanin family protein (.1) Lus10039817 [exp] 98 / 2e-24 AT2G20740 266 / 3e-90 Tetraspanin family protein (.1.2.3) Lus10018584 [exp] 92 / 4e-22 AT2G20740 243 / 8e-82 Tetraspanin family protein (.1.2.3) Lus10030939 [exp] 90 / 5e-21 AT1G32400 364 / 1e-127 tobamovirus multiplication 2A (.1.2.3) Lus10003011 [exp] 88 / 2e-20 AT1G32400 311 / 2e-107 tobamovirus multiplication 2A (.1.2.3) Lus10011042 [exp] 87 / 4e-20 AT1G32400 378 / 4e-133 tobamovirus multiplication 2A (.1.2.3) Lus10040108 [exp] 59 / 3e-10 AT1G32400 240 / 3e-80 tobamovirus multiplication 2A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G253500 [exp] 254 / 6e-85 AT2G20230 255 / 5e-85 Tetraspanin family protein (.1) Potri.001G146100 [exp] 87 / 4e-20 AT1G32400 329 / 8e-114 tobamovirus multiplication 2A (.1.2.3) Potri.019G101800 [exp] 84 / 1e-19 AT2G20740 238 / 1e-79 Tetraspanin family protein (.1.2.3) Potri.003G087800 [exp] 85 / 3e-19 AT1G32400 319 / 7e-110 tobamovirus multiplication 2A (.1.2.3) Potri.011G050900 [exp] 83 / 5e-19 AT2G20740 223 / 4e-74 Tetraspanin family protein (.1.2.3) Potri.013G134200 [exp] 83 / 5e-19 AT2G20740 239 / 2e-80 Tetraspanin family protein (.1.2.3) Potri.004G041500 [exp] 79 / 1e-17 AT2G20740 226 / 3e-75 Tetraspanin family protein (.1.2.3) Potri.018G038400 [exp] 44 / 4e-05 AT2G20740 109 / 4e-29 Tetraspanin family protein (.1.2.3) Potri.006G241400 [exp] 43 / 8e-05 AT2G20740 108 / 1e-28 Tetraspanin family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10011910 pacid=23169218 polypeptide=Lus10011910 locus=Lus10011910.g ID=Lus10011910.BGIv1.0 annot-version=v1.0 ATGCGTCCCAATTGCTGCCATGTTTCCCTCGCATTTCTCCTCAAGTTCTTCAATTTCCTCCAGGCCTTCCTCGGCATCTCCATCATCCTCTATTCCGTTT GGATGCTCGATCAATGGAACCACCACCTCCCCGTCTCTCCTCCTCCGTTCCCAGCTCCTTCTTCATCTTCTCCCGCCGTCCTCCTTTCTCGATCGCACTC AATCACGACGACCCTCGATCTCGCCTCTCAGATGGAGCTCTCCGGCCTCGGCGTCTACTTCAATTCCGTTGACCTTCCAGCTCCTTGGTTCATCTACTCC TTTATGGGTGTGGGCGCCATAATATGCTGTATCACTTTCATTGGTTGCATTGCAGCTGAAGCTATCCATGGCTGTTGCCTATGCTTTTACACCGTCCTGA AAGTTCTACTCATTCTGCTAGAAGCAGCTTTGATTGCTTTCATTGCGATTGATCGTCACTGGGAAAAGGATATTCCATTTGATCCAACTGGAGAAGTTCA AAGTATTCGAGCTTTTATTGAAGACAACATCGAGATATGTAAATGGGTTGGCATAACAGTGGTTGTAGTTCAGGCTGTGTCTTTGCTGCTTGCTATGGTT CTGAGAGGTTTGGTTGCCACTCCCAAGAGCGATATTGATGGAGAGGATGATTATGAGACTGGTAGAAGTAGAAGATGGGAACCACTCTTAGGCCAACCAG GCCAAACATCCGTATCAGGGACAGGATCAGACATTTGGAGCTCAAGAATGAGGGAAAAGGTACTTGTCCGTTAG
AA sequence Show only first row Show all	>Lus10011910 pacid=23169218 polypeptide=Lus10011910 locus=Lus10011910.g ID=Lus10011910.BGIv1.0 annot-version=v1.0 MRPNCCHVSLAFLLKFFNFLQAFLGISIILYSVWMLDQWNHHLPVSPPPFPAPSSSSPAVLLSRSHSITTTLDLASQMELSGLGVYFNSVDLPAPWFIYS FMGVGAIICCITFIGCIAAEAIHGCCLCFYTVLKVLLILLEAALIAFIAIDRHWEKDIPFDPTGEVQSIRAFIEDNIEICKWVGITVVVVQAVSLLLAMV LRGLVATPKSDIDGEDDYETGRSRRWEPLLGQPGQTSVSGTGSDIWSSRMREKVLVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20230			Tetraspanin family protein (.1...		Lus10011910 [exp]	0	1
AT2G20230			Tetraspanin family protein (.1...		Lus10022841 [exp]	3.7	0.8338
AT5G40250			RING/U-box superfamily protein...		Lus10014526 [exp]	4.0	0.8018
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10036577 [exp]	4.0	0.8284
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Lus10001835 [exp]	7.4	0.7978
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10008631 [exp]	7.5	0.8071
AT1G60750			NAD(P)-linked oxidoreductase s...		Lus10041185 [exp]	7.9	0.7930
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10006868 [exp]	14.7	0.7901
AT1G21380			Target of Myb protein 1 (.1)		Lus10018948 [exp]	14.9	0.7743
AT3G19240			Vacuolar import/degradation, V...		Lus10014053 [exp]	18.5	0.7669
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10032835 [exp]	22.8	0.7742

Compare expression of checked genes

Lus10011910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.