Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28760 416 / 8e-133 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT2G20240 345 / 5e-108 Protein of unknown function (DUF3741) (.1) AT5G43880 318 / 2e-96 Protein of unknown function (DUF3741) (.1) AT3G53540 112 / 4e-25 unknown protein AT1G63670 44 / 0.0003 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022843 [exp] 578 / 0 AT4G28760 369 / 2e-116 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10022842 [exp] 338 / 7e-111 AT4G28760 198 / 2e-57 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10024434 [exp] 96 / 4e-20 AT3G53540 449 / 2e-144 unknown protein Lus10025296 [exp] 93 / 5e-19 AT3G53540 456 / 7e-146 unknown protein Lus10002008 [exp] 63 / 7e-10 AT1G63670 100 / 2e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10035490 [exp] 58 / 3e-08 AT1G63670 100 / 1e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G253600 [exp] 609 / 0 AT4G28760 752 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.014G194600 [exp] 545 / 0 AT4G28760 583 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.006G213700 [exp] 124 / 7e-29 AT3G53540 433 / 1e-136 unknown protein Potri.016G080200 [exp] 112 / 3e-25 AT3G53540 234 / 1e-64 unknown protein Potri.001G103400 [exp] 63 / 7e-10 AT2G45900 86 / 5e-17 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Potri.010G211700 [exp] 51 / 3e-06 AT2G39435 155 / 2e-40 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Potri.016G095500 [exp] 43 / 0.001 AT5G02390 189 / 9e-50 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12552 [flax] [poplar] DUF3741 Protein of unknown function (DUF3741)
Representative CDS sequence Show only first row Show all	>Lus10011911 pacid=23169186 polypeptide=Lus10011911 locus=Lus10011911.g ID=Lus10011911.BGIv1.0 annot-version=v1.0 ATGGCTTTGATTCGACAGAAATTCATGGAACTCAAATGTCTGGCTACTGATGAAAAGGGTCGTCAGTCCAAGGAATTTCAAGAAGCATTGGATATCTTGA GCTCCAACAGAGATCTATTGCTCAAGTTTTTCCAGGAGCCAAATTCAATGTTCTCTCAACATCTCTATGACATGCTGTCTCTTCCTCCACCTCCCGAGAC AAAGCGAATCACTGTTCTCAGACCGTCTACTAAGGTGGCTGATAGTGATAAATCAGCAGGATTGGCGAAGAAGGGTGATAAAAAGGCCACGAATCTTGGA TGGGGCAGCAATGACCTTGGACATTCTCCAACTTTTCCCAGTGATGAATATTGTTCCCAACCAACGAGGATAGTAGTGTTAAAGCCTAGCCCAGCAAGGA CTTTTGATATTAAAGCTGTGGTCTCTCCACCATTGTCAACGCCGAGAGGTGGACAGGGTGAAGGGCTTTGTGATGAAGCTGATGATCACGAGGCACAAGA ATCAAAAGAGGTGGCAAGCGAAATCACAAGGCAAGTGCGCGAAAATCTGATGAGTCAGGGGAGGGATGAACCATTCTTGTCCTCTGTGTTTTCAAACGGA TACATCTGCGATGACAGTTCATTCAACAAATCGGAAGCTGAGTCCGAAAATGGAAACCTTAGCGATTCAGAGATTGCATCTCCTACTTCAAGACACTCAT GGGACTATATCAATAGGTTTGGCAGTCCATTCTCTTCGGCATCCTTCAGTCGTGCATCTTGCTCCCCAGAGTCATCTGTTTGCAGGGAAGCAAAGAAGAG GCTATCGGAAAGATGGGCCATGATGGCCTCAAATATGAGTTATCAGGAGCAGAACAATGATGCTCGAAAAAGCTCTAGCACTTTGGGTGAGATGCTGGCT CTCTCTGATGGGAAGAAGCCGGTGGTATCTGAGGAACGGCCTAAAATCAAGGAACCAGAGATGGAGGCCTCAACTTCCTACTTGGCTAGCAATCAGAATA AGGAAGAGAGCATGGAGGAGTCTCCTAGAAGTCTTGTGAGGTCCAAATCTCTTCCTGTATCGTCTTCTATTTATGGTGGCCGGCTTAATGTTGAGATTTC CGAGTCGGAGGCTGTCAAATCTCAAGTCCCCAAGGAGCTGACCAAGGCAAAGAGCATGAAATCATCCTTGAGAGGAAAAGTTTCCGGCTTATTTTTCTCG AAAAACAAGAAATCGAAAGATAAAAACAGTGCATCTCTATCTCAAGCTGACTGCCAATCCGTCACCTCAGAAGCACCAGGATCAATAGTGCCTCATCCTG CCCGAACCAGTGACGATGCATCTTCACGCATCAGCAAGAATGGCGTGGACGAGTGTTGCTCTTCCAGTTTGGATGCTTCTCATGAGGGAGTGTTGACAGT TGCAAAGCCAGAAATGGAAAGGAATTCAAGTGAGAACCAAGATCAGCCAAGCCCAATCTCGGTTTTGGAAGCGCCATTCGAAGAGGATGACATCAATATC ACAGAGCTTTGCGCTAGTATAAAGCTAGACCGCCGCGGGCCGGAGTTACTCTCAAAGTCTAACTTAATAGACAAGTCACCGCCCATCGGATCAATCTCTC GGACACTCTCCTGGGACGATACCTCCTGCAGCACAGACACATCATCCTCTTCTTACCCGCTAAAGCCCTCTCCGACCTCCTCGAGCGCCGAGGAGGAAGA AAGGGACATACTTTCCTTCATGGACACGCTACTATCAGCAGCTGGCCTGCAAGACTCGTCGGTTTCGCCAAGATGGCATTCACCGGACAGCCCATTAGAC CCGTCACTGAGAGACAAGCTTGCCAGCCAAGAAGTAGATAATGAAATTATTGCAAAGAGGAGACAGATAAGATCAACTAGGAAGCTCTTGTTTGACTCTC TCAACGCGGCACTCCTAGACATGATCACATCATCAACAAGCACCAGTCATAGTGGTGGGCCCACCGTCACGGTGAAGGAGAGGGTGGTGGGGCAAATGAG GGAGTGGGTTTGGAGGAGGAAGGAGGCTGCGGAGGCGGCGGAGGAGGAAGGGTCGAGTGTGGTGGTGGAGAGGGTGGTGAGGAAGGAGGTGGCAGCGGTG GGGAAAGTGTGGACGAATGAGGTGGCGGAAGCGGTGGAGAGTTTAGGGAAGGAAATAGAAGGGAAGTTACTGGAAGAGCTGGTGGAGGAGGCGGTGGTTG ATTTGACCAGCGGTAGGGAGGTGGCGGAGGTGATGCTATGA
AA sequence Show only first row Show all	>Lus10011911 pacid=23169186 polypeptide=Lus10011911 locus=Lus10011911.g ID=Lus10011911.BGIv1.0 annot-version=v1.0 MALIRQKFMELKCLATDEKGRQSKEFQEALDILSSNRDLLLKFFQEPNSMFSQHLYDMLSLPPPPETKRITVLRPSTKVADSDKSAGLAKKGDKKATNLG WGSNDLGHSPTFPSDEYCSQPTRIVVLKPSPARTFDIKAVVSPPLSTPRGGQGEGLCDEADDHEAQESKEVASEITRQVRENLMSQGRDEPFLSSVFSNG YICDDSSFNKSEAESENGNLSDSEIASPTSRHSWDYINRFGSPFSSASFSRASCSPESSVCREAKKRLSERWAMMASNMSYQEQNNDARKSSSTLGEMLA LSDGKKPVVSEERPKIKEPEMEASTSYLASNQNKEESMEESPRSLVRSKSLPVSSSIYGGRLNVEISESEAVKSQVPKELTKAKSMKSSLRGKVSGLFFS KNKKSKDKNSASLSQADCQSVTSEAPGSIVPHPARTSDDASSRISKNGVDECCSSSLDASHEGVLTVAKPEMERNSSENQDQPSPISVLEAPFEEDDINI TELCASIKLDRRGPELLSKSNLIDKSPPIGSISRTLSWDDTSCSTDTSSSSYPLKPSPTSSSAEEEERDILSFMDTLLSAAGLQDSSVSPRWHSPDSPLD PSLRDKLASQEVDNEIIAKRRQIRSTRKLLFDSLNAALLDMITSSTSTSHSGGPTVTVKERVVGQMREWVWRRKEAAEAAEEEGSSVVVERVVRKEVAAV GKVWTNEVAEAVESLGKEIEGKLLEELVEEAVVDLTSGREVAEVML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28760			Protein of unknown function (D...		Lus10011911 [exp]	0	1
AT4G28760			Protein of unknown function (D...		Lus10022842 [exp]	1.0	0.8514
AT5G02190		EMB24, ATASP38,...	PROMOTION OF CELL SURVIVAL 1, ...		Lus10024375 [exp]	5.1	0.8146
AT1G69690	TCP	AtTCP15, TCP15	TEOSINTE BRANCHED1/CYCLOIDEA/P...		Lus10037190 [exp]	5.3	0.7854
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Lus10035518 [exp]	8.0	0.7831
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10025395 [exp]	9.2	0.8095
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10005249 [exp]	9.9	0.7822
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10014288 [exp]	10.0	0.7670
AT1G14020			O-fucosyltransferase family pr...		Lus10037144 [exp]	12.2	0.7876
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10015274 [exp]	12.6	0.7990
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031882 [exp]	13.8	0.7817

Compare expression of checked genes

Lus10011911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.