Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28760 141 / 2e-39 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT5G43880 82 / 1e-18 Protein of unknown function (DUF3741) (.1) AT3G53540 54 / 7e-09 unknown protein AT2G17550 39 / 0.001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025296 [exp] 59 / 2e-10 AT3G53540 456 / 7e-146 unknown protein Lus10024434 [exp] 40 / 0.0004 AT3G53540 449 / 2e-144 unknown protein Lus10022843 [exp] 0 / 1 AT4G28760 369 / 2e-116 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G253600 [exp] 187 / 1e-55 AT4G28760 752 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.006G213700 [exp] 49 / 4e-07 AT3G53540 433 / 1e-136 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011912 pacid=23169241 polypeptide=Lus10011912 locus=Lus10011912.g ID=Lus10011912.BGIv1.0 annot-version=v1.0 ATGAATCAGAGGCAAACAGTAGAGAGCAATTTCCCTGGATGTTTGGGGAGGATGGTGAATCTGTTCGATCTAGCCAATGGTGTCAGTGGAAACAACAGGC TGCTGACGAATAAACCGCACAATGGTTCTTCACTGGCAAGGAGTCAATCAGACGTTGTGAGGATGATGGGTGCACCTTTTGGAGATCAGATCGAAGACAA AATGATTGTGTCTGAGTTTCGGAGATGCTCCTCTAATAAAAAGGCAAGTGGGACGCCGATGAAGACCCTAATAGCTCAAGAACTTAATAAAGAAGTAGAG AGCAAGCAAAAGCCATCGAATTTAGTAGCTAAGTTGATGGGTCTTGACGCTCTTCCGCATCAGCACCAGCAGCAGCAGCCTAACTCCCGCGGGACAAGGA AATGCAGTGTGGGGATTATGCTTATGAAGTCTGGCAGCAGTCTCTCAGAGATGACTCGCCGCAGAAGAGAAGGGGTGATAGGAATATGA
AA sequence Show only first row Show all	>Lus10011912 pacid=23169241 polypeptide=Lus10011912 locus=Lus10011912.g ID=Lus10011912.BGIv1.0 annot-version=v1.0 MNQRQTVESNFPGCLGRMVNLFDLANGVSGNNRLLTNKPHNGSSLARSQSDVVRMMGAPFGDQIEDKMIVSEFRRCSSNKKASGTPMKTLIAQELNKEVE SKQKPSNLVAKLMGLDALPHQHQQQQPNSRGTRKCSVGIMLMKSGSSLSEMTRRRREGVIGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28760			Protein of unknown function (D...		Lus10011912 [exp]	0	1
AT4G28760			Protein of unknown function (D...		Lus10022843 [exp]	1.0	0.9507
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10016684 [exp]	3.2	0.9236
AT3G51650			unknown protein		Lus10009098 [exp]	3.9	0.9090
AT3G12590			unknown protein		Lus10001699 [exp]	10.6	0.9304
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10013625 [exp]	12.6	0.9345
AT5G22760			PHD finger family protein (.1)		Lus10009383 [exp]	13.0	0.9212
AT5G07320		APC3	ATP/phosphate carrier 3, Mitoc...		Lus10032523 [exp]	14.3	0.8892
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Lus10035941 [exp]	14.6	0.9307
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014548 [exp]	16.5	0.9079
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10006377 [exp]	16.7	0.9138

Compare expression of checked genes

Lus10011912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.