Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20260 119 / 6e-35 PSAE-2 photosystem I subunit E-2 (.1) AT4G28750 110 / 1e-31 PSAE-1, PSAE1 PSA E1 KNOCKOUT, Photosystem I reaction centre subunit IV / PsaE protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022846 [exp] 172 / 7e-56 AT2G20260 128 / 9e-39 photosystem I subunit E-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G253800 [exp] 119 / 3e-35 AT2G20260 106 / 2e-30 photosystem I subunit E-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0610 [flax] [poplar] ETAP PF02427 [flax] [poplar] PSI_PsaE Photosystem I reaction centre subunit IV / PsaE
Representative CDS sequence Show only first row Show all	>Lus10011913 pacid=23169237 polypeptide=Lus10011913 locus=Lus10011913.g ID=Lus10011913.BGIv1.0 annot-version=v1.0 ATGTCTAGCTGCAGCATGGCATCAGCTGCTTCAGGTTTCGTAATGGCACCAAAAGTTGCCTCTGTAAAAACCACCAGCAGTAACTCCCTGTTTTTCCCAG CGGCCAAGAGCAGCAACAACTCCAGGCTGGTGGCTGTGAGGGCCGCTGCCGATGAGGGAGCAGCGGCGCCACCTGCCGCTACAACAGAAGCTCCCGCGGC TGACGGTGAGGCAGCACCGGCAGCTGCTCCTAAGAAAGTCAAGCCTCCCCAAATTGGACCCAAGAGAGGCACCAAGGTGAAGATTATGAGGAGGGAATCT TACTGGTTCAATGGGGTTGGATCCGTAGTAGCCGTTGATCAGGACCCGAAGACTCGGTACCCGGTCGTGGTCCGATTCGACAAGGTTAACTACGCTAATG TATCGACCAACAACTACGCCTTGGACGAAATTGCAGAAGTTAAATAG
AA sequence Show only first row Show all	>Lus10011913 pacid=23169237 polypeptide=Lus10011913 locus=Lus10011913.g ID=Lus10011913.BGIv1.0 annot-version=v1.0 MSSCSMASAASGFVMAPKVASVKTTSSNSLFFPAAKSSNNSRLVAVRAAADEGAAAPPAATTEAPAADGEAAPAAAPKKVKPPQIGPKRGTKVKIMRRES YWFNGVGSVVAVDQDPKTRYPVVVRFDKVNYANVSTNNYALDEIAEVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Lus10011913 [exp]	0	1
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10025798 [exp]	1.4	0.9935
AT4G12800		PSAL	photosystem I subunit l (.1)		Lus10002143 [exp]	2.2	0.9869
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10012086 [exp]	2.4	0.9909
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10007399 [exp]	2.4	0.9894
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Lus10022846 [exp]	2.6	0.9852
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Lus10002084 [exp]	4.0	0.9881
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10035864 [exp]	4.2	0.9865
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10018385 [exp]	5.7	0.9815
AT4G16410			unknown protein		Lus10003907 [exp]	6.0	0.9710
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10041966 [exp]	6.2	0.9698

Compare expression of checked genes

Lus10011913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.