Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28740 372 / 2e-128 unknown protein AT1G02910 119 / 8e-30 LPA1 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022845 [exp] 293 / 6e-100 AT4G28740 206 / 8e-67 unknown protein Lus10036345 [exp] 139 / 9e-37 AT1G02910 620 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10010280 [exp] 137 / 4e-36 AT1G02910 610 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10019188 [exp] 45 / 7e-05 AT3G14630 158 / 5e-41 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G194500 [exp] 430 / 2e-151 AT4G28740 301 / 5e-101 unknown protein Potri.002G206300 [exp] 140 / 2e-37 AT1G02910 615 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11998 [flax] [poplar] DUF3493 Low psii accumulation1 / Rep27
Representative CDS sequence Show only first row Show all	>Lus10011914 pacid=23169236 polypeptide=Lus10011914 locus=Lus10011914.g ID=Lus10011914.BGIv1.0 annot-version=v1.0 ATGGTCCATAGAGAAATATCGATCACCGTGGCGCCAGGAAGATCATCCAAATTCCAATCTCTGGTAATTGAAGCAACGGCTGCCGGGAAACAGCCATTGC AAAGCTTTTTCAAGTTTTGGTTCTGCTTCCGGTTTGAACTTGCAATGGCCATAGCTATGGCTTCTTCCATGTCTCAAACCTCTCACACCGTAATTCCCCC CACTATATCCCATTCCAACAGCATCCGCAGCAGCTCGTGCTTCTTCTGCCTCTCCAATTTCCGCCGCTCTGACACAAGAACAAGAACAATTCATCTCGCC ACCGGACACTACAAGATCCCCAATCGCTGCCGATCAACCAAAATCCGGTGCTCCTCCGACGAAGTAAGTTCCACAGCCAAGATAAGGGGCGAAGTGCTAG CCCCCTTCCGATCCGTACGAATGTTCTTCTACGCAGCATTCATCGCCAGCGGCTCGCTCGGCGGGTTAATCGCGACCAGCAGAGCAATCGGAGCTTTGTC GAATCCTTCGAGAGCAGCCGAGGTCCCGGAGATTCTTAACGGACTAGCTATAGACATAGGAGCAGTTTCACTATTCGCGTTCCTATACTACAGAGAGAAC AAAACTAGAAATGCACAGCTGGCCAGGCTATCCAGGGAAGAGAGGCTGTCGAATCTGAAGCTGAGGATTGATGAGAAGAGGACGATTCCGATGAGCTCGT TGCGAGGGTTCGCTAGGATCGTGATATGCGCTGGACCTGGTGAGTTCATCATGGATGCGTTTAGGAAGAGTGAGCCTTTCACTGAAGGGCTGGTGGAGAG AGGGGTGCTGGTTGTTCCGTTTGCTACTGATGGGGAGAGTTTGCCTGGATTTCAGTTCGATGAGAGTGAGGAGATGAAAGATTTTACGTCGAAGAGGAAG AGGTTGTGGCAGCTGACTCCACTCTTCGCTAATGAATGGGCCAAGTGGTTAGATGATCAGAAGAAACTTGCTGGTGTCTCTGATGAATCTCCTGTGTACT TATCGTTAAGGTTAGATGGAAGGGTCCGAGGGAGCGGCGTTGGCTACCCACCATGGAATGCTTTCGTTGCGCAATTGCCGCCGGTGAAAGGAATATGGAG TGGTCTTCTTGATGGAATGGATGGTAGAGTGCTGTAG
AA sequence Show only first row Show all	>Lus10011914 pacid=23169236 polypeptide=Lus10011914 locus=Lus10011914.g ID=Lus10011914.BGIv1.0 annot-version=v1.0 MVHREISITVAPGRSSKFQSLVIEATAAGKQPLQSFFKFWFCFRFELAMAIAMASSMSQTSHTVIPPTISHSNSIRSSSCFFCLSNFRRSDTRTRTIHLA TGHYKIPNRCRSTKIRCSSDEVSSTAKIRGEVLAPFRSVRMFFYAAFIASGSLGGLIATSRAIGALSNPSRAAEVPEILNGLAIDIGAVSLFAFLYYREN KTRNAQLARLSREERLSNLKLRIDEKRTIPMSSLRGFARIVICAGPGEFIMDAFRKSEPFTEGLVERGVLVVPFATDGESLPGFQFDESEEMKDFTSKRK RLWQLTPLFANEWAKWLDDQKKLAGVSDESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRVL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28740			unknown protein		Lus10011914 [exp]	0	1
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10016502 [exp]	7.4	0.9218
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Lus10001525 [exp]	9.8	0.9205
AT1G06690			NAD(P)-linked oxidoreductase s...		Lus10016327 [exp]	12.6	0.9102
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040399 [exp]	13.6	0.8819
AT1G73885			unknown protein		Lus10005112 [exp]	14.3	0.9120
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Lus10026089 [exp]	15.1	0.9080
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10021824 [exp]	15.8	0.9092
AT5G17520		MEX1, RCP1	MALTOSE EXCESS 1, root cap 1 (...		Lus10009540 [exp]	21.2	0.8897
AT2G39210			Major facilitator superfamily ...		Lus10033790 [exp]	21.6	0.8363
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10001278 [exp]	23.8	0.9049

Compare expression of checked genes

Lus10011914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.