Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28730 153 / 9e-48 GrxC5 glutaredoxin C5, Glutaredoxin family protein (.1) AT2G20270 140 / 1e-42 Thioredoxin superfamily protein (.1.2) AT5G63030 71 / 4e-16 GRXC1 glutaredoxin C1, Thioredoxin superfamily protein (.1) AT5G20500 66 / 2e-14 Glutaredoxin family protein (.1) AT5G18600 63 / 2e-13 Thioredoxin superfamily protein (.1) AT5G40370 62 / 6e-13 GRXC2 glutaredoxin C2, Glutaredoxin family protein (.1.2) AT1G77370 59 / 1e-11 Glutaredoxin family protein (.1) AT4G15700 57 / 3e-11 Thioredoxin superfamily protein (.1) AT3G21460 57 / 4e-11 Glutaredoxin family protein (.1) AT1G03020 54 / 6e-10 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022844 [exp] 274 / 2e-95 AT4G28730 177 / 3e-57 glutaredoxin C5, Glutaredoxin family protein (.1) Lus10022253 [exp] 76 / 4e-18 AT5G40370 162 / 2e-53 glutaredoxin C2, Glutaredoxin family protein (.1.2) Lus10013089 [exp] 75 / 1e-17 AT5G40370 162 / 2e-53 glutaredoxin C2, Glutaredoxin family protein (.1.2) Lus10021590 [exp] 72 / 3e-16 AT5G20500 180 / 1e-59 Glutaredoxin family protein (.1) Lus10017148 [exp] 71 / 5e-16 AT5G20500 182 / 2e-60 Glutaredoxin family protein (.1) Lus10001237 [exp] 66 / 3e-14 AT5G63030 171 / 2e-56 glutaredoxin C1, Thioredoxin superfamily protein (.1) Lus10042104 [exp] 63 / 5e-13 AT5G63030 177 / 1e-58 glutaredoxin C1, Thioredoxin superfamily protein (.1) Lus10028355 [exp] 62 / 9e-13 AT1G77370 171 / 2e-56 Glutaredoxin family protein (.1) Lus10033965 [exp] 62 / 9e-13 AT5G18600 148 / 5e-48 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254100 [exp] 155 / 2e-48 AT4G28730 176 / 2e-56 glutaredoxin C5, Glutaredoxin family protein (.1) Potri.018G133400 [exp] 70 / 1e-15 AT5G20500 182 / 2e-60 Glutaredoxin family protein (.1) Potri.015G078900 [exp] 69 / 3e-15 AT5G63030 171 / 3e-56 glutaredoxin C1, Thioredoxin superfamily protein (.1) Potri.012G082800 [exp] 67 / 1e-14 AT5G63030 155 / 6e-50 glutaredoxin C1, Thioredoxin superfamily protein (.1) Potri.002G208700 [exp] 61 / 1e-12 AT3G62930 157 / 1e-51 Thioredoxin superfamily protein (.1) Potri.014G134000 [exp] 59 / 5e-12 AT3G62930 158 / 8e-52 Thioredoxin superfamily protein (.1) Potri.001G347700 [exp] 58 / 2e-11 AT5G40370 158 / 1e-51 glutaredoxin C2, Glutaredoxin family protein (.1.2) Potri.007G017300 [exp] 57 / 1e-10 AT1G77370 163 / 8e-53 Glutaredoxin family protein (.1) Potri.002G208400 [exp] 56 / 2e-10 AT2G30540 160 / 8e-53 Thioredoxin superfamily protein (.1) Potri.008G214500 [exp] 56 / 2e-10 AT3G21460 177 / 2e-59 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10011915 pacid=23169224 polypeptide=Lus10011915 locus=Lus10011915.g ID=Lus10011915.BGIv1.0 annot-version=v1.0 ATGGCGACTGCATCTCATTTCGTTAATCTCACCTCTCTCCCTCTCAACTCCTGCCTCCCGCCATCCCTCGCCACTATCCCCATCACCTCTTTCCCCCTCA ACCACAACCGCCGCAACGGCGCTCTTCTCACAGCCACCGTCAATGTCTCCACAAAAACACATCGACCCATCACCGTGGTCCGAGCCATGTCCGATTCTTC AGATTCTTCCTCTTCCTTCGGTGCCAGGCTCGAAGAGACCGTGAAGAGGACCGTGGCCGAGAACCCAGTCGTGGTTTACTCCAAGTCTTGGTGCTCGTAC TCGTCTGAGGTGAAAGGATTGTTCAAGAAGCTTGGAGTAGAGCCGTTGGTTATCGAATTGGATGAACTGGGTGCGCAAGGGCCGCAGTTGCAGAAGATAC TGGAAAGGGTTACGGGCCAACACACTGTTCCTAATGTTTTTATAGATACTTTGAAGCTCAACAGGAATGGCGAACTCCAGTCCTTGCTCGAAAAGGCCAA TGCCAAAGCCAGGCAGAGTTAG
AA sequence Show only first row Show all	>Lus10011915 pacid=23169224 polypeptide=Lus10011915 locus=Lus10011915.g ID=Lus10011915.BGIv1.0 annot-version=v1.0 MATASHFVNLTSLPLNSCLPPSLATIPITSFPLNHNRRNGALLTATVNVSTKTHRPITVVRAMSDSSDSSSSFGARLEETVKRTVAENPVVVYSKSWCSY SSEVKGLFKKLGVEPLVIELDELGAQGPQLQKILERVTGQHTVPNVFIDTLKLNRNGELQSLLEKANAKARQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10011915 [exp]	0	1
AT4G29870			Oligosaccharyltransferase comp...		Lus10003228 [exp]	1.0	0.9353
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10001387 [exp]	2.0	0.9272
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10035202 [exp]	3.9	0.8878
AT2G47840		AtTic20-II	translocon at the inner envelo...		Lus10020219 [exp]	4.7	0.8630
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10027839 [exp]	4.9	0.8860
AT5G02850			hydroxyproline-rich glycoprote...		Lus10002749 [exp]	5.2	0.8648
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10039485 [exp]	6.3	0.8633
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	6.7	0.8822
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10039876 [exp]	6.9	0.8471
AT4G12340			copper ion binding (.1)		Lus10032225 [exp]	6.9	0.8681

Compare expression of checked genes

Lus10011915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.