Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20300 881 / 0 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT5G56890 473 / 8e-153 Protein kinase superfamily protein (.1) AT4G02010 376 / 7e-120 Protein kinase superfamily protein (.1) AT3G20530 313 / 4e-100 Protein kinase superfamily protein (.1) AT5G13160 315 / 1e-99 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT1G68690 322 / 3e-99 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT5G18610 313 / 2e-98 Protein kinase superfamily protein (.1.2) AT1G20650 308 / 3e-98 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT3G24550 314 / 5e-97 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G24540 310 / 6e-97 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022848 [exp] 1188 / 0 AT2G20300 912 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10027635 [exp] 584 / 0 AT5G56890 887 / 0.0 Protein kinase superfamily protein (.1) Lus10011933 [exp] 462 / 7e-147 AT5G56890 880 / 0.0 Protein kinase superfamily protein (.1) Lus10037526 [exp] 358 / 3e-113 AT4G02010 865 / 0.0 Protein kinase superfamily protein (.1) Lus10011466 [exp] 373 / 3e-112 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015756 [exp] 331 / 1e-105 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10012814 [exp] 317 / 9e-100 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 317 / 9e-100 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10043050 [exp] 310 / 9e-99 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G194300 [exp] 956 / 0 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.002G254600 [exp] 946 / 0 AT2G20300 947 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.006G152000 [exp] 477 / 6e-155 AT5G56890 846 / 0.0 Protein kinase superfamily protein (.1) Potri.003G039100 [exp] 466 / 2e-152 AT5G56890 701 / 0.0 Protein kinase superfamily protein (.1) Potri.018G068100 [exp] 467 / 3e-150 AT5G56890 801 / 0.0 Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 380 / 2e-121 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.014G119100 [exp] 380 / 4e-121 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 325 / 2e-103 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 324 / 4e-103 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 315 / 9e-101 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10011917 pacid=23169205 polypeptide=Lus10011917 locus=Lus10011917.g ID=Lus10011917.BGIv1.0 annot-version=v1.0 ATGGATAAGTTATGTTCCCTTTATGGATTTGCAGCAAGTTCTACTTCAGAGAGGGTGCCATTTGGCTGGTTGCAGCCTTCTCTAAGGCATCGGCTTAAAC CTCCTCCCCTAAGGCCGTCTTTTGTACCTGCACCTGCCCCTGCTCCTTTCCCACTGCATAAGGCCTCCTCCAGTCCGAGAATTTCTCCCTTACCGAGGCG TCGTGGTCATCATCGTCATCACCATCCTAAACCAGCTGTAGTCCCTCCATCCCCTTCAGACAAGCCAAGATGTGATCAAACTTGTGTCGATCCACTCACG GCAACTCCATATGGTTCACCTTGTGGCTGTGTATTTCCTATGAAAGTCAGGCTGCTTTTGACTGTGGCTCCTTATACCATTTTTCCAGTCATGAATGAGC TAGAAGTTGAACTTGCAACAGGCACTTATTTAGAGCAGAGTCAAGTGACGATAATGGGTGCAACTGCTGATAGTCAAAATCAGGGAGAAACTGTCGTGGA TGTTAATTTGGTGCCGTTGGGAGATAAATTTGATAATACCACGGCTAGCCTTATTTATCAAAGATTCTGGCATAAGAAGGTGCCTCTAAATTCGACTGTA TTTGGCAACTATGAAGTGGTATCTATTGTTTATCCAGGTATTCCTTCTTCACCACCATATCCAAGTGATTCAGCCACCAGTCCATCTGGAAATGGCCGAG ATCTGCCATTCACTGTAAATCCGGTGAAGAAGAGCAAGGGGATGAACTTTAGGACCTTACTAATCATTGCACTGTCAGCTGTTGCATTCTTGCTGGTCTT AGTTGCGGTAATCTCCATTTTCATCAAATGGAAAAAGTATGGGAAACCCTCAAATGCTGTTGGTCCTACATTCCCATCATCTATCAATAAAAGATCAGGT TTAGGATCCTTCTTATCAGGTAGTATTGCAAGCTCAACATCAATGTCCCTGATGTCCAATATGGCTCCTTGCATGTTATCTGTCAAAACATTTACATTTG TGGAGCTTGATAGGGCAACTGAGAAGTTCAGTTCAAAGAGGATCCTGGGTGTGGGAGGATTTGGGTGTGTTTACCATGGGATCATGGAGGACAAGACCGA AGTTGCTGTTAAAGTGCTTACTAGGGACAATCAGAATGGAGACCGCGAATTCATAGCAGAAGTAGAGATGTTGAGTCGGTTACATCATCGTAATCTTGTC AAACTGATTGGCATCTGCATCGAAGGGCGAACCCGCTGTTTGGTGTATGAACTTGTCCACAATGGCAGTGTTGAATCTCATTTACACGGTGTCGATAAGC GAAAAGGCTATCTCGACTGGGATGCACGGTTGAAAATTGCTCTTGGATCAGCTAGAGGACTTGCCTATCTACATGAAGATTCAAACCCTCGAGTTATCCA CCGAGATTTTAAAGGCAGTAACATTTTGCTGGAAGATGACTTCACCCCCAAGGTATCTGATTTCGGCTTGGCAAAGGAAGCTACTGAAGGAAGTCATCAC ATCTCTACTAGAGTCATGGGGACTTTTGGGTACGTAGCCCCTGAATATGCAATGACAGGTCACCTACTCGTGAAAAGCGATGTCTACAGCTACGGAGTCG TACTACTCGAACTTCTCTCCGGCAGAAAACCTGTCGATATGTCCCAACCTCAGGGACAAGAAAACTTGGTAACATGGGCACGTCCACTACTAACAACAAG AGAAGGACTGGAGCAGCTGGTGGATCCATCTTTAGCCGGAAGATACGATTTCGATGACATGGCGAAAGTGGCCGCCATCGCCTCGATGTGCGTCCACCCG GAAGTAACCAACAGACCCTTCATGGGAGAAGTAGTGCAGGCTCTAAAACTGATATACAACGATACCGACGATACCGGTGCAGACAACTACAGCCAAAAGG AGGAGTCTTCCGCACTAGACTCGGACTTCAAAGGTGGCGATTTCGTGCCTTCAGACAGCAGCTGGTGGAATGCAGGTGCAATTTCACCACACTTGACCTA CGGCCAGGCATCGCCTTTCATTACAATGGAGTACAGCTCAGGTCCGCTCGAAGACTTGGAAAACAGACCGGTTTCCGTGTCGAGCTTTTCGTCTCCTGTT AGGCACGGGAACCGGTCCGGTCCGTTGAGAACGATACGGAGTAAACCTTCGTTTTACAGATTCAGAGGAAGCATGAGCGATCATGGCGGGGATCCTCGGC CCGCGAGACGTTCTGCGAATGATGAATATTGGGTTTGA
AA sequence Show only first row Show all	>Lus10011917 pacid=23169205 polypeptide=Lus10011917 locus=Lus10011917.g ID=Lus10011917.BGIv1.0 annot-version=v1.0 MDKLCSLYGFAASSTSERVPFGWLQPSLRHRLKPPPLRPSFVPAPAPAPFPLHKASSSPRISPLPRRRGHHRHHHPKPAVVPPSPSDKPRCDQTCVDPLT ATPYGSPCGCVFPMKVRLLLTVAPYTIFPVMNELEVELATGTYLEQSQVTIMGATADSQNQGETVVDVNLVPLGDKFDNTTASLIYQRFWHKKVPLNSTV FGNYEVVSIVYPGIPSSPPYPSDSATSPSGNGRDLPFTVNPVKKSKGMNFRTLLIIALSAVAFLLVLVAVISIFIKWKKYGKPSNAVGPTFPSSINKRSG LGSFLSGSIASSTSMSLMSNMAPCMLSVKTFTFVELDRATEKFSSKRILGVGGFGCVYHGIMEDKTEVAVKVLTRDNQNGDREFIAEVEMLSRLHHRNLV KLIGICIEGRTRCLVYELVHNGSVESHLHGVDKRKGYLDWDARLKIALGSARGLAYLHEDSNPRVIHRDFKGSNILLEDDFTPKVSDFGLAKEATEGSHH ISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPQGQENLVTWARPLLTTREGLEQLVDPSLAGRYDFDDMAKVAAIASMCVHP EVTNRPFMGEVVQALKLIYNDTDDTGADNYSQKEESSALDSDFKGGDFVPSDSSWWNAGAISPHLTYGQASPFITMEYSSGPLEDLENRPVSVSSFSSPV RHGNRSGPLRTIRSKPSFYRFRGSMSDHGGDPRPARRSANDEYWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10011917 [exp]	0	1
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10022848 [exp]	1.0	0.9477
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10003666 [exp]	1.7	0.9010
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10012390 [exp]	2.0	0.9062
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10025892 [exp]	3.2	0.8924
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10023645 [exp]	4.0	0.9008
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10038211 [exp]	9.3	0.8407
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014272 [exp]	9.7	0.8636
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10006777 [exp]	14.0	0.8666
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025974 [exp]	15.4	0.8769
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10021238 [exp]	16.5	0.8504

Compare expression of checked genes

Lus10011917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.