Plant FIBer expression Database

Lus10011918 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G58610 937 / 0 ketol-acid reductoisomerase (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022849
[exp]
1057 / 0 AT3G58610 978 / 0.0 ketol-acid reductoisomerase (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G052700
[exp]
955 / 0 AT3G58610 989 / 0.0 ketol-acid reductoisomerase (.1.2.3)
Potri.004G043700
[exp]
948 / 0 AT3G58610 981 / 0.0 ketol-acid reductoisomerase (.1.2.3)
Potri.014G055100
[exp]
324 / 5e-108 AT3G58610 340 / 2e-114 ketol-acid reductoisomerase (.1.2.3)
Potri.019G089532
[exp]
186 / 3e-53 AT3G58610 164 / 2e-45 ketol-acid reductoisomerase (.1.2.3)
Potri.019G089366
[exp]
124 / 7e-34 AT3G58610 154 / 7e-46 ketol-acid reductoisomerase (.1.2.3)
Potri.013G117532
[exp]
150 / 7e-06 AT3G58610 0 / 1 ketol-acid reductoisomerase (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0106 6PGD_C PF01450 IlvC Acetohydroxy acid isomeroreductase, catalytic domain
CL0063 NADP_Rossmann PF07991 IlvN Acetohydroxy acid isomeroreductase, NADPH-binding domain
Representative CDS sequence
>Lus10011918 pacid=23169209 polypeptide=Lus10011918 locus=Lus10011918.g ID=Lus10011918.BGIv1.0 annot-version=v1.0
ATGGCCGCCACCGCCGCCGCCGCCGCCATGACTCCTGCGGTCTCCTCAACTCCATCATCCTCTCTGAAGCCCAAGGCTTCGAGTTTCAGCTCCGTCGGAT
TCACTTCGTCGGCGAAGCCCCTAGTATCTCGCATCATTTCCTCCCGCGGCGGACGATCCTCTCGGATGACCGTTTCCATGGTGTCCACCCCTGCTGCTGT
CGTTCCCACGACGTCGCTGGACTTCCAGACGTCCGTGTTCAAGAAGGAGAAGATCAGCCTTGCTGGCCATGACGAGTACATTGTGAGGGGAGGGAGGGAT
TTGTTCCCGCTGTTGCCTGAAGCTTTCAAGGGGATTAAGCAAATTGGAGTCATCGGCTGGGGATCTCAGGCTCCTGCCCAAGCTCAGAACCTGAAGGATT
CTCTAGTTGAGGCGAAATCTGATATTGTTGTAAAGATTGGGCTGAGGAAGGGTTCAAGCTCATTTGCCGAGGCTCGTGCTGCTGGGTTCTCTGAAGAGGA
TGGTACCCTGGGAGATATGTGGGAGACTATTTCTGGAAGTGATCTTGTTATGCTTCTTATTTCGGATGCAGCTCAGGCTGATAACTTTGAGAAGATCTTA
TCTTACATGAAGCCCAACAGCATCCTTGGTCTTTCCCATGGGTTTCTCTTGGGACATCTGCAGAGTTTGGGGATGGATTTCCCTAAGAATATCAGTGTGA
TAGCTGTTTGTCCTAAAGGAATGGGCCCTTCCGTGAGAAGGCTCTACGTGCAAGGGAAAGAGGTCAATGGTGCTGGCATCAACTCAAGTTTTGCTGTCCA
TCAGGATGTTGATGGCAGAGCAACTGATGTTGCCTTGGGTTGGTCTGTTGCTCTTGGTTCTCCATTCACATTTGCCACTACCTTGGAGCAGGAGTATAAG
AGTGATATTTTCGGCGAGCGTGGTATTCTTCTTGGTGCTGTTCATGGTGCCGTGGAATGCTTGTTCAGAAGATACACTGAAAATGGAATGGACGAGGATT
CAGCCTACAAGAACACTGTCGAGTGCATCACTGGAATTGTATCAAGGACCATCTCAACTAAGGGTATGTTGGCAGTGTACAACTCCTTGTCTGAAGATGA
AAAGAAAGAATTTGAGCTTGCTTATAGCTCATCTTTCTATCCTTGCATGGACATCTTGTACGAGTGTTACGAGGATGTTGCCAGTGGCAGTGAGATCCGT
AGTGTTGTTCTTGCTGGACGTCGATTCTACGAAAAGGAAGGCCTCCCAGCTTTCCCCATGGGCAAGATCGACCAAACCCGGATGTGGAAGGTCGGTGAGC
GTGTACGTTCAACTAGGCCGAAGGGCGACTTGGGTCCGATGCACCCTTTCACCGCTGGTGTTTTCGTCGCATTAATGATGGCTCAGATCGAGGTGTTGAG
GAAGAAGGGCCACTCATACTCCGAGATCATCAACGAAAGTCTGATCGAGGCGGTCGATTCCCTGAACCCGTTCATGCACGCTCGCGGAGTTTCCTTCATG
GTCGACAACTGCTCCACCACCGCTCGTCTGGGATCGCGAAAGTGGGCCCCACGATTTGACTACGTCCTCACTCAGCAGGCGTTCGTAGCTGTGGATGCTG
GTTCTTCAGTCAACAGGGACCTCATGAGCAACTTCTTCTCCGATCCAGTCCATGGAGCAATCGAGGTGTGCGCGCAGCTGAGACCAACCGTCGATATCTC
TGTGCCTGCCGATGCTGACTTTGTCCGCCCCGAGCTGCGTCAGGCCAACTGA
AA sequence
>Lus10011918 pacid=23169209 polypeptide=Lus10011918 locus=Lus10011918.g ID=Lus10011918.BGIv1.0 annot-version=v1.0
MAATAAAAAMTPAVSSTPSSSLKPKASSFSSVGFTSSAKPLVSRIISSRGGRSSRMTVSMVSTPAAVVPTTSLDFQTSVFKKEKISLAGHDEYIVRGGRD
LFPLLPEAFKGIKQIGVIGWGSQAPAQAQNLKDSLVEAKSDIVVKIGLRKGSSSFAEARAAGFSEEDGTLGDMWETISGSDLVMLLISDAAQADNFEKIL
SYMKPNSILGLSHGFLLGHLQSLGMDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYK
SDIFGERGILLGAVHGAVECLFRRYTENGMDEDSAYKNTVECITGIVSRTISTKGMLAVYNSLSEDEKKEFELAYSSSFYPCMDILYECYEDVASGSEIR
SVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPKGDLGPMHPFTAGVFVALMMAQIEVLRKKGHSYSEIINESLIEAVDSLNPFMHARGVSFM
VDNCSTTARLGSRKWAPRFDYVLTQQAFVAVDAGSSVNRDLMSNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQAN

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G58610 ketol-acid reductoisomerase (.... Lus10011918
[exp]
0 1
AT3G58610 ketol-acid reductoisomerase (.... Lus10022849
[exp]
1.0 0.9198
AT4G36680 Tetratricopeptide repeat (TPR)... Lus10024025
[exp]
2.0 0.8861
AT5G08490 SLG1 SLOW GROWTH 1, Tetratricopepti... Lus10016943
[exp]
3.9 0.8622
AT5G16220 Octicosapeptide/Phox/Bem1p fam... Lus10017612
[exp]
4.5 0.8487
AT1G07930 GTP binding Elongation factor ... Lus10015070
[exp]
4.9 0.8835
AT4G23620 Ribosomal protein L25/Gln-tRNA... Lus10011005
[exp]
6.9 0.8829
AT1G62730 Terpenoid synthases superfamil... Lus10032248
[exp]
8.2 0.8347
AT2G22900 Galactosyl transferase GMA12/M... Lus10011550
[exp]
8.5 0.8617
AT1G77405 Pentatricopeptide repeat (PPR)... Lus10042736
[exp]
9.4 0.8483
AT3G07770 Hsp89.1, AtHsp9... HEAT SHOCK PROTEIN 90-6, HEAT ... Lus10006374
[exp]
11.3 0.8509

Lus10011918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.