Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43900 958 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT1G04160 943 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT4G28710 916 / 0 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1) AT2G20290 775 / 0 ATXIG, XIG MYOSIN XI G, myosin-like protein XIG (.1) AT1G54560 742 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT5G20490 706 / 0 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT1G08730 677 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT1G17580 650 / 0 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT1G04600 569 / 0 ATXIA, XIA myosin XI A (.1) AT2G31900 556 / 0 ATMYO5, PCR11, ATXIF, XIF MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022850 [exp] 1290 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10043153 [exp] 815 / 0 AT5G43900 1250 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10005521 [exp] 766 / 0 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10021570 [exp] 734 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10017160 [exp] 732 / 0 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10003315 [exp] 721 / 0 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10023696 [exp] 664 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10032597 [exp] 551 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10009791 [exp] 527 / 1e-170 AT1G04160 2103 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254300 [exp] 1162 / 0 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.008G174500 [exp] 923 / 0 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.013G043900 [exp] 762 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.019G013800 [exp] 759 / 0 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.006G145700 [exp] 728 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.001G199200 [exp] 721 / 0 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.009G025300 [exp] 596 / 0 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.001G233100 [exp] 587 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.006G220000 [exp] 531 / 8e-172 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.010G062480 [exp] 155 / 4e-44 AT2G33240 146 / 2e-41 myosin XI D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0220 [flax] [poplar] PF01843 [flax] [poplar] DIL DIL domain
Representative CDS sequence Show only first row Show all	>Lus10011919 pacid=23169255 polypeptide=Lus10011919 locus=Lus10011919.g ID=Lus10011919.BGIv1.0 annot-version=v1.0 ATGTTTTCTTCCTGTATTCAGAGTCACTGTCGCAAATACTTGGCCCGGTTGCATTACATCAGATTGAAGAAAGCAGCAATTGCAACTCAGTGTGCATGGA GGGGAAAAGTTGCTCGCGGAGAACTCAAGAAGCTTAAGATGGCTGCTAGAGAGACTGGAGCACTTCAGGCAGCCAAGAACAAGCTGGAAAAGCAAGTTGA AGAATTGACGTGGAGACTTCAGCTTGAGAAACGCATGAGATCTGATTTGGAAGAAGCTAAGACACTTGAAAATACAAAGCTACAATCTGCTCTGCAAGAA ATGAAAATCCAGTTCAAAGACACTAAAGAAATGCTTGCGAAGGAGCGTGATGCTGCTAAGAAGATAGCAGAAATTGTCCCCGTAATACAAGAAGTTCCAG TAGTTGACAATGTGATGATGGAGAAGCTTACAGCTGAAAATGAGAAATTGAAGGCTATGGTAAACTCGTTGGAACTGAAAATTGATGAAACTGAGAAGAA ATTTGAAGAGACGAGCAGAATAAGTGAAGAGAGACTGAAGCAAGCTCTAGAAGCGGAATCAAAAATAGTTGAACTGAAAACTGCTATGCATAGGCTTGAA GAAAAATTTATGGACATTGAAACCGAAAATCAAGTTCTACGGCAGCAGACCTTGTCAGAGACTCCTGTTAAGAAGACATCTGATAGACCACCAGTTCCAC CATCTCATAGCTCAGAAAATGGTCACCTTCACAATGATGAGAGCAGAGCCAATGAATCACAGAGTACAACACCTGTAAAGACTTTTGGTACAGAGGCAGA CGGCAGGTTTAGGAGATCACATATTGAACGGCAACATGAGAGCATTGATGCGCTTATCAACTGTGTTACAAGTAACATCGGGTTTAGTCAAGGAAAACCA GTTGCAGCTTTCACCATATACAAGTGTCTTCTTCATTGGAAGTCTTTTGAAGCAGAAAGGACTAGTGTGTTTGATCGTCTCATTCAAATGATTGGTTCTG CAATTGAGAATGAAGATAACAATGATCACATGGCTTACTGGTTATCAAATACCTCGGCTCTGTTATTTTTACTGCAAAAGAGTCTAAAAGCAGCTGGTGC CAATGGTGCGACTCCAAATCGTAAACCCTCCTCTGCTGCATCCTTGTTTGGCAGAATGGCTATGGGTTTCCGCTCATCACCTTCTTCCAATAGCCTCGCT GCGGTTTTCACTGTAGTACGCCAAGTGGAAGCCAAGTATCCAGCTTTGCTTTTCAAGCAGCAGCTTGCAGCATACGTGGAGAAAATTTATGGAATTATTC GAGACAACTTGAAGAAGGAACTGACATCTTTGCTTTCCTTATGCATCCAAGCGCCTAGGACCTCAAAGGCAAGTGTTCTGAAATCAGGGCGATCATTTGG CAAGGATGCTGCATCAAGTCACTGGCAAGGAATTATTGATAGTCTCAACAATCTTCTCAGCACACTGAAACAAAATTTCGTGCCTCCAGTCCTTATCCAG AAGATCTACACGCAAACTTTCTCGTACATCAATGTACAATTGTTCAATAGCCTTCTTCTGCGTCGTGAGTGTTGTACATTCAGTAACGGTGAATATGTCA AATCTGGATTAGCTGAACTCGAGCTATGGTGCTGTCAGGCAAAGGACGAGTATGCTGGCACATCTTGGGAAGAACTTAAGCATATACGGCAAGCTGTTGG ATTCTTGGTTATACACCAGAAGTATCGGATATCATACGATGAAATAACCAACGATCTATGCCCCATCTTGAGCGTGCAACAGTTGTACAGAATTTGTACA CTCTACTGGGATGACAACTACAACACCAGAAGTGTGTCTCCCGATGTCATCTCGAACATGAGGATACTTATGACTGAGGACTCCAACAGTGCTGTCAGCA GTTCCTTTTTGCTAGATGACAATTCTGGAATCCCGTTCTCGGTCGAGGACCTCTCGAATTCGATGCAAGAGAAGGATTTCGCAGACGTGGAGGCCGCAGA AGAACTGGTTGAAAATCCAGCCTTCCAATTTTTACAGGAGTAA
AA sequence Show only first row Show all	>Lus10011919 pacid=23169255 polypeptide=Lus10011919 locus=Lus10011919.g ID=Lus10011919.BGIv1.0 annot-version=v1.0 MFSSCIQSHCRKYLARLHYIRLKKAAIATQCAWRGKVARGELKKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRSDLEEAKTLENTKLQSALQE MKIQFKDTKEMLAKERDAAKKIAEIVPVIQEVPVVDNVMMEKLTAENEKLKAMVNSLELKIDETEKKFEETSRISEERLKQALEAESKIVELKTAMHRLE EKFMDIETENQVLRQQTLSETPVKKTSDRPPVPPSHSSENGHLHNDESRANESQSTTPVKTFGTEADGRFRRSHIERQHESIDALINCVTSNIGFSQGKP VAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDNNDHMAYWLSNTSALLFLLQKSLKAAGANGATPNRKPSSAASLFGRMAMGFRSSPSSNSLA AVFTVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELTSLLSLCIQAPRTSKASVLKSGRSFGKDAASSHWQGIIDSLNNLLSTLKQNFVPPVLIQ KIYTQTFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWCCQAKDEYAGTSWEELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICT LYWDDNYNTRSVSPDVISNMRILMTEDSNSAVSSSFLLDDNSGIPFSVEDLSNSMQEKDFADVEAAEELVENPAFQFLQE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10011919 [exp]	0	1
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10010675 [exp]	3.2	0.8466
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10018668 [exp]	6.6	0.8606
AT3G26700			Protein kinase superfamily pro...		Lus10002882 [exp]	10.3	0.7569
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10038410 [exp]	11.0	0.8641
AT5G58510			unknown protein		Lus10031287 [exp]	14.2	0.8419
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10022850 [exp]	14.4	0.8566
AT2G05590			TLD-domain containing nucleola...		Lus10014476 [exp]	16.2	0.8058
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039509 [exp]	17.4	0.8109
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008945 [exp]	17.7	0.8349
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10035993 [exp]	20.8	0.7995

Compare expression of checked genes

Lus10011919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.