Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17370 531 / 0 UBP1B oligouridylate binding protein 1B (.1.2) AT3G14100 516 / 0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 511 / 0 UBP1A oligouridylate-binding protein 1A (.1.2) AT3G19130 149 / 3e-40 ATRBP47B RNA-binding protein 47B (.1) AT1G49600 145 / 4e-39 ATRBP47A RNA-binding protein 47A (.1) AT1G11650 140 / 1e-37 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G54900 140 / 2e-37 ATRBP45A RNA-binding protein 45A (.1) AT4G27000 139 / 5e-37 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G19350 138 / 2e-36 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G47490 136 / 1e-35 ATRBP47C RNA-binding protein 47C (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027641 [exp] 702 / 0 AT1G17370 569 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10008130 [exp] 535 / 0 AT1G17370 664 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10013167 [exp] 448 / 5e-157 AT1G17370 575 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10036435 [exp] 395 / 2e-130 AT4G38670 417 / 7e-139 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Lus10041109 [exp] 363 / 2e-123 AT1G17370 378 / 3e-129 oligouridylate binding protein 1B (.1.2) Lus10021754 [exp] 149 / 3e-40 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10031277 [exp] 139 / 5e-37 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031844 [exp] 139 / 5e-37 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012070 [exp] 135 / 2e-35 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G139300 [exp] 577 / 0 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 550 / 0 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.003G069000 [exp] 544 / 0 AT1G17370 621 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.006G279600 [exp] 496 / 4e-175 AT1G17370 469 / 9e-165 oligouridylate binding protein 1B (.1.2) Potri.018G002300 [exp] 484 / 2e-170 AT1G17370 461 / 1e-161 oligouridylate binding protein 1B (.1.2) Potri.014G034600 [exp] 150 / 8e-41 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 147 / 8e-40 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.009G105300 [exp] 146 / 3e-39 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.004G143400 [exp] 145 / 5e-39 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.009G054400 [exp] 144 / 1e-38 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10011924 pacid=23146522 polypeptide=Lus10011924 locus=Lus10011924.g ID=Lus10011924.BGIv1.0 annot-version=v1.0 ATGATGCAGCAGCAGCAGCAGAGGCTTAAGCAGCAACAGATCATGAGCATGATGCAGTATCACCCTGCTGCTTATCTAGCTGCTCCGCAGATAGAGCCTA TCTTGAGTGGAAATCTGCCTCCTGGCTTTGATCCAAGTACATGCCGCAGTGTGTACGTGGGAAACATCCACCCATCGGTCACAGAACCCCTCCTGCAGCA GGTTTTCTCAAGCACTGGACCAATTGAAGGATGTAAGCTCATTAGAAAAGAGAAGTCATCCTATGGCTTTGTGGACTACTTTGATCGGAGATGTGCTTCC CATGCCATCTTAACCCTGAACGGAAGGCCTCTGTTTGGACAACCTATCAAAGTTAACTGGGCATATGCTAGCAGTCAGCGAGAGGATACTTCAGGTCACT ATAATATTTTTGTGGGTGACCTTAGCCCAGAAGTTACCGATGCCACCTTGTATGCTTGCTTCTCCAGTTATCCTACTTGCTCAGATGCGAGAGTTATGTG GGACCAGAAGACTGGTCGTTCGAGGGGTTTTGGTTTTGTTTCTTTCAGGAACCAGCAAGATGCTCAAAGTGCAATTAATGATTTGAATGGAAAGTGGCTG GGAAGCAGACAAATTAGATGTAATTGGGCGACAAAAGGTGCCCTCTCTAGTGAAGATAAGCAGGGCTCCGATGCCAAAAGTGTTGTTGAGCTGACTAGTG GATCTGATGATGGTCAAGACAAGAAAAGTGACGATGCCCCAGAAAATAATCCCCAGTATACAACCGTTTATGTTGGCAATCTTGCTCCTGAGGTTACTAA TGTGGATCTTCATCGGCATTTCCATACATTTGGAGCTGGTATCATTGAGGATGTGAGAGTGCAGAGGGACAAGGGTTTTGGATTTGTGAGGTACAGTACC CATGATGAAGCGTCTCTTGCAATCCAAATCGGAAACGCAAGGATCCTATATGGAAAACCAATCAAGTGTTCATGGGGTAGCAAACCAACCCCACCAGGGA TGAGCTCTACACCGCTTCCGCTGCCACCAGCTGCGGCGGCAGGTGGTGGGCAGAATGGAGGATTCTCAGCAGCAGAGCTAATGAATTACGAGAGGCAGAT GGCATTGAGCAAAATGGCACTGATGCAGCAGCATGTACAGATGAGACAGGCTGCAGCCATGGGAATGGCGGGTGGAAGTGGGCAGGGTGTGTACGACGGC AGTGGATTCCCAGGCGTTGCCACTAGTCAGCAGCAGCAGCAGCAGCAGCTTATGTACTATCAGTAA
AA sequence Show only first row Show all	>Lus10011924 pacid=23146522 polypeptide=Lus10011924 locus=Lus10011924.g ID=Lus10011924.BGIv1.0 annot-version=v1.0 MMQQQQQRLKQQQIMSMMQYHPAAYLAAPQIEPILSGNLPPGFDPSTCRSVYVGNIHPSVTEPLLQQVFSSTGPIEGCKLIRKEKSSYGFVDYFDRRCAS HAILTLNGRPLFGQPIKVNWAYASSQREDTSGHYNIFVGDLSPEVTDATLYACFSSYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLNGKWL GSRQIRCNWATKGALSSEDKQGSDAKSVVELTSGSDDGQDKKSDDAPENNPQYTTVYVGNLAPEVTNVDLHRHFHTFGAGIIEDVRVQRDKGFGFVRYST HDEASLAIQIGNARILYGKPIKCSWGSKPTPPGMSSTPLPLPPAAAAGGGQNGGFSAAELMNYERQMALSKMALMQQHVQMRQAAAMGMAGGSGQGVYDG SGFPGVATSQQQQQQQLMYYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10011924 [exp]	0	1
AT1G68300			Adenine nucleotide alpha hydro...		Lus10034337 [exp]	2.4	0.9255
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10003772 [exp]	2.8	0.8968
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10018843 [exp]	7.3	0.9220
AT5G26990			Drought-responsive family prot...		Lus10015214 [exp]	7.6	0.8779
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10022931 [exp]	7.9	0.9021
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10017968 [exp]	10.4	0.9089
AT1G26520			Cobalamin biosynthesis CobW-li...		Lus10004653 [exp]	13.0	0.8728
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10016596 [exp]	13.0	0.8947
AT4G17900			PLATZ transcription factor fam...		Lus10030968 [exp]	17.4	0.9083
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10043301 [exp]	18.0	0.8711

Compare expression of checked genes

Lus10011924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.