Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43520 136 / 2e-39 Transmembrane proteins 14C (.1) AT2G26240 106 / 2e-29 Transmembrane proteins 14C (.1) AT1G33265 42 / 8e-05 Transmembrane proteins 14C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027640 [exp] 313 / 9e-109 AT3G43520 164 / 4e-50 Transmembrane proteins 14C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G217400 [exp] 179 / 8e-56 AT3G43520 161 / 7e-49 Transmembrane proteins 14C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03647 [flax] [poplar] Tmemb_14 Transmembrane proteins 14C
Representative CDS sequence Show only first row Show all	>Lus10011926 pacid=23146546 polypeptide=Lus10011926 locus=Lus10011926.g ID=Lus10011926.BGIv1.0 annot-version=v1.0 ATGGCTGAGCTAGCTCCATTTCAATTTCGCACTCACTCAACCTCCTCTCTTCTCCTCCCCCGCTCTTCCAAGTTTCGCTTCAGCGCTACGGCCGCCGCTC CCTCGATCTCTATGCGTCTCCAGGGCCTATCACTGAACGGTCCGATAAATTTTCATTTCAAGCCTCCTCCGATCGTCGTTTCTAGAGCCGTCGCCACTTC CGACTCCAAGACTTGGACGATCTCCACGGGAAACGTTGACCCGGCGTCTCAACGATTTGAAATTGAACTGGACGACGGTAGCGGAGGGAACAATTACGGT GATAAAGGAAATAACGGCGGTAGAGGAGGAGGAGGCGGCGGCGGTGGAGATAGTCATAACGAAGGCGGGGAAGAATCTCCGGATGATAGCAGTAAAAAGA AGATGGCACTGTCCATGTCTCAGAAACTCACTCTTGGTTATGCCGTTCTTGTTGGAGCTGGAGGTCTGATGGGCTATATGAAAAGTGGCAGTCAGAAATC GCTCTTGGCAGGCGGCATCTCAGCATCAGTGCTCTATTATGTCTTCACACAGCTTCCCACGAATCCTGTGTATGCCTCATCCATTGGACTTGGTGTGGCG TCTGTGCTTACTGGGGTGATGACTTCTCGATTCATGAGGTCGAAGAAGGTTTTCCCTGCAGGAGTTGTGTCCCTGATGTCTATGGTAATGACTGGAGGGT ATATCCACGGAATCCTGCGTAGCATGCATTGA
AA sequence Show only first row Show all	>Lus10011926 pacid=23146546 polypeptide=Lus10011926 locus=Lus10011926.g ID=Lus10011926.BGIv1.0 annot-version=v1.0 MAELAPFQFRTHSTSSLLLPRSSKFRFSATAAAPSISMRLQGLSLNGPINFHFKPPPIVVSRAVATSDSKTWTISTGNVDPASQRFEIELDDGSGGNNYG DKGNNGGRGGGGGGGGDSHNEGGEESPDDSSKKKMALSMSQKLTLGYAVLVGAGGLMGYMKSGSQKSLLAGGISASVLYYVFTQLPTNPVYASSIGLGVA SVLTGVMTSRFMRSKKVFPAGVVSLMSMVMTGGYIHGILRSMH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43520			Transmembrane proteins 14C (.1...		Lus10011926 [exp]	0	1
AT3G12050			Aha1 domain-containing protein...		Lus10021072 [exp]	3.0	0.9176
AT4G39520			GTP-binding protein-related (....		Lus10006801 [exp]	7.9	0.8240
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10002943 [exp]	9.2	0.8266
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Lus10037545 [exp]	14.8	0.8366
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10004340 [exp]	15.2	0.8270
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10001657 [exp]	16.1	0.8045
AT2G36930	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10023928 [exp]	18.6	0.8025
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	20.7	0.8312
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10012073 [exp]	22.4	0.8301
AT5G51740			Peptidase family M48 family pr...		Lus10038897 [exp]	22.5	0.7941

Compare expression of checked genes

Lus10011926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.