Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07530 46 / 2e-06 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G37650 40 / 0.0002 GRAS SCL9 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040789 [exp] 72 / 2e-15 AT3G46600 432 / 4e-145 GRAS family transcription factor (.1.2.3) Lus10000825 [exp] 58 / 1e-10 ND / Lus10039970 [exp] 49 / 4e-08 ND / Lus10011610 [exp] 49 / 9e-08 ND / Lus10005606 [exp] 49 / 1e-07 ND / Lus10040014 [exp] 47 / 9e-07 ND / Lus10038549 [exp] 42 / 1e-05 ND / Lus10000798 [exp] 41 / 2e-05 ND / Lus10040284 [exp] 42 / 4e-05 AT1G07530 600 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G242000 [exp] 51 / 4e-08 AT2G29060 488 / 9e-165 GRAS family transcription factor (.1) Potri.009G033100 [exp] 49 / 1e-07 AT2G29060 506 / 1e-171 GRAS family transcription factor (.1) Potri.009G032700 [exp] 42 / 4e-05 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241700 [exp] 42 / 5e-05 AT1G07530 759 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G242100 [exp] 42 / 8e-05 AT2G29060 563 / 0.0 GRAS family transcription factor (.1) Potri.006G086600 [exp] 40 / 0.0002 AT2G37650 723 / 0.0 GRAS family transcription factor (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011928 pacid=23146529 polypeptide=Lus10011928 locus=Lus10011928.g ID=Lus10011928.BGIv1.0 annot-version=v1.0 ATGGGGTTTTCTACTGTCAAAAATTTCATTTGGGAGAGTGGCGATCTTCAGAGTACATCAATTGAACCAGATCTGTCTTCCCCTTGCAGAGATGCAAAGG AGAGGATCGCCCATTACTTTTGGAACGGTCTAGAATCACGCCTCGTCGCTATTCCAACGAGACAATATTTGGCCTCCGCCTTCAACATACTGAGAGCTTA TCAGATTTTCGCCGCGATTGGTGTCGACTCCAAACCTTCAAATCACCTGTCAGCTACTGGAGGCGTGGTCACATGTCTTACTACCAGGACAGCTACTTCA CTGGAGCTTCCTACCCTCCTCTTTGGCCAGCATATCCACCACCTTAGTGGCCAGAGTACAATCCATACCTACATTTCCTGGGGTATCCATATCCTCCACC AGACTAGTGATCATTGGGGACGTATCTTGTGA
AA sequence Show only first row Show all	>Lus10011928 pacid=23146529 polypeptide=Lus10011928 locus=Lus10011928.g ID=Lus10011928.BGIv1.0 annot-version=v1.0 MGFSTVKNFIWESGDLQSTSIEPDLSSPCRDAKERIAHYFWNGLESRLVAIPTRQYLASAFNILRAYQIFAAIGVDSKPSNHLSATGGVVTCLTTRTATS LELPTLLFGQHIHHLSGQSTIHTYISWGIHILHQTSDHWGRIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011928 [exp]	0	1
					Lus10006918 [exp]	9.0	0.8256
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	12.7	0.8256
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	15.6	0.8256
AT1G80780			Polynucleotidyl transferase, r...		Lus10032797 [exp]	15.8	0.6703
					Lus10040397 [exp]	18.0	0.8256
					Lus10007508 [exp]	20.1	0.8256
AT1G04670			unknown protein		Lus10004041 [exp]	22.0	0.8256
AT3G53690			RING/U-box superfamily protein...		Lus10042610 [exp]	23.8	0.8256
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10009924 [exp]	24.2	0.7919
					Lus10027066 [exp]	25.5	0.8256

Compare expression of checked genes

Lus10011928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.