Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20900 77 / 3e-17 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 12 (.1) AT3G43440 51 / 2e-07 ZIM TIFY3A, JAZ11 jasmonate-zim-domain protein 11 (.1.2) AT1G74950 42 / 0.0003 ZIM TIFY10B, JAZ2 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) AT1G19180 41 / 0.0003 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1 (.1.2) AT5G13220 41 / 0.0004 ZIM JAS1, TIFY9, JAZ10, AT5G13220 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027639 [exp] 256 / 3e-86 AT5G20900 107 / 8e-29 jasmonate-zim-domain protein 12 (.1) Lus10027648 [exp] 45 / 2e-05 AT1G19180 159 / 3e-47 jasmonate-zim-domain protein 1 (.1.2) Lus10002576 [exp] 42 / 0.0001 AT5G13220 112 / 2e-31 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G217200 [exp] 102 / 4e-26 AT5G20900 126 / 3e-36 jasmonate-zim-domain protein 12 (.1) Potri.018G047100 [exp] 94 / 4e-23 AT5G20900 122 / 6e-35 jasmonate-zim-domain protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF09425 [flax] [poplar] Jas_motif Jas motif CL0281 [flax] [poplar] PF06200 [flax] [poplar] tify tify domain
Representative CDS sequence Show only first row Show all	>Lus10011929 pacid=23146515 polypeptide=Lus10011929 locus=Lus10011929.g ID=Lus10011929.BGIv1.0 annot-version=v1.0 ATGGAAAGCGAGACCGGTCAATCTGCTGAGGAGCAAGTAGCAAACAACAAGGTCGAGGTGAAAAAGGAGGAAGCAGCAGAGAATGAGGGAGAAGAGACTG GGATTATTGGTGGCGGCGCTGACCAAAAGTCTGGATCTGAACCCACTGCTGCTCTTCCTTCTTCTAACTCCTCCTCCTCCTCCAGGGATGAAGCTTTGGC AAAATCTGGGATAGTAGACACCAGTGTTCCTGCAGAGCCAGAACAACTCACTATTTTCTATGGCGGAAGTGTAATTGTCCTTGATGGGATTCCTGCAGAT AAGGCCCGTGAGATAATGGCCATTGCTGCCGCTGCAGCGAAAGCTGTCAAGTCTACTGATATCAAGAAGATCGAAACAGCAACACCAACTCCTGCTTCTC CTGCTACTGCTCCTGCTGTTACTGGTACAGGTACAGGTACACCATTGCTCTCGAGGTCTGCTACAATGCAGAGTACTACTGCTACTCCTACTGGATTGGC TTCAGAGCAGTACGCCGCGCATAAGAATTCCCTCTGCAAAATGCAAGCTGAATTACCTATTGCAAGGAGACACTCTCTTCAGCGCTTTTTTGAGAAGAGA AGGGACAGGATGATGACCAAGAGTCCATACTCTATCCCTTCCTCTCCCTCTGCAGCTAAGCTTGAAGACAATCAGAAGATGGCTGCTGCTGCTGCTGCTG CTGCCACTACCACTCCCAACCATATTGTTTTATTGGTTTAA
AA sequence Show only first row Show all	>Lus10011929 pacid=23146515 polypeptide=Lus10011929 locus=Lus10011929.g ID=Lus10011929.BGIv1.0 annot-version=v1.0 MESETGQSAEEQVANNKVEVKKEEAAENEGEETGIIGGGADQKSGSEPTAALPSSNSSSSSRDEALAKSGIVDTSVPAEPEQLTIFYGGSVIVLDGIPAD KAREIMAIAAAAAKAVKSTDIKKIETATPTPASPATAPAVTGTGTGTPLLSRSATMQSTTATPTGLASEQYAAHKNSLCKMQAELPIARRHSLQRFFEKR RDRMMTKSPYSIPSSPSAAKLEDNQKMAAAAAAAATTTPNHIVLLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20900	ZIM	TIFY3B, JAZ12	jasmonate-zim-domain protein 1...		Lus10011929 [exp]	0	1
AT4G21580			oxidoreductase, zinc-binding d...		Lus10018450 [exp]	3.3	0.7933
AT5G10990			SAUR-like auxin-responsive pro...		Lus10026297 [exp]	6.5	0.6629
AT1G17070			GC-rich sequence DNA-binding f...		Lus10002251 [exp]	7.4	0.6848
AT3G62580			Late embryogenesis abundant pr...		Lus10010016 [exp]	7.7	0.7717
AT2G19270			unknown protein		Lus10020014 [exp]	11.8	0.7017
AT1G15230			unknown protein		Lus10035871 [exp]	12.5	0.7242
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10011167 [exp]	14.5	0.7098
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10006071 [exp]	14.8	0.7112
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10043076 [exp]	23.8	0.6932
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10004646 [exp]	24.2	0.7149

Compare expression of checked genes

Lus10011929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.