Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05940 513 / 0 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT2G26290 506 / 2e-178 ARSK1 root-specific kinase 1 (.1) AT5G35580 477 / 9e-166 Protein kinase superfamily protein (.1) AT1G72540 434 / 1e-149 Protein kinase superfamily protein (.1) AT5G01020 417 / 2e-143 Protein kinase superfamily protein (.1) AT1G61590 417 / 3e-143 Protein kinase superfamily protein (.1) AT3G28690 393 / 1e-134 Protein kinase superfamily protein (.1.2.3) AT5G15080 392 / 1e-132 Protein kinase superfamily protein (.1) AT3G01300 385 / 9e-130 Protein kinase superfamily protein (.1) AT2G07180 380 / 1e-128 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027638 [exp] 856 / 0 AT2G05940 529 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10034897 [exp] 504 / 2e-176 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033429 [exp] 501 / 8e-175 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10008110 [exp] 465 / 6e-162 AT2G05940 486 / 2e-170 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10013148 [exp] 464 / 3e-161 AT2G05940 484 / 3e-169 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033294 [exp] 423 / 2e-146 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1) Lus10034757 [exp] 421 / 1e-144 AT1G61590 624 / 0.0 Protein kinase superfamily protein (.1) Lus10036762 [exp] 412 / 7e-141 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 399 / 3e-135 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G219300 [exp] 587 / 0 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 547 / 0 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.003G066300 [exp] 485 / 7e-170 AT2G05940 540 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G168000 [exp] 472 / 1e-164 AT2G05940 519 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G128500 [exp] 433 / 1e-149 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1) Potri.003G105400 [exp] 427 / 4e-147 AT1G61590 597 / 0.0 Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 425 / 2e-146 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 425 / 2e-146 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 406 / 4e-138 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 401 / 3e-136 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10011930 pacid=23146537 polypeptide=Lus10011930 locus=Lus10011930.g ID=Lus10011930.BGIv1.0 annot-version=v1.0 ATGAAAAGCACATGGAAATCGATGATCTGTGGCTGTTCAAGCTTCAACTACAGAGAGACAAGTCCGCTGCCGGAGTTAGTGGAGGAGGATGAGGATGAGG AGGAAGGTGTTGTGAAAAAGACGATGAGCAGTACGAGTTCCTTCTCAAGGATGTCTCTCTCCGACGTCAGCAATCCGAAACTGTGTATGGAAGACATCTC GAATTCGTTCGTGGGTTCGAAGCTGTATGTTTTCACATTTGCAGAGTTGCGGTTGATAACCCAGAACTATGCTCGGGTTAACCTACTCGGGGAAGGAGGG TTCGGTCCCGTTTACAAAGGGTTCGTTGATGACAAGGTCAAGCCTGGGTTGAAGGCTCAGCCTGTAGCTGTCAAGTCCCTGGATTTGGATGGGCTACAAG GCCACAAGGAGTGGGTGGCGGAGATAATATTTCTGGGACAGCTGCGGCATCCGCATCTAGTGAAACTGATTGGTTACTGCTACGAGGAAGAACAGAGGGC TCTGGTTTACGAGTATATGCCTAGGGGCAGTCTCGAGAATCAGCTCTTCAGAAGATTTTCTGCTGCATTGCCATGGTCAACTAGGATGAAAATTGCTCTG GGAGCAGCCAAAGGTCTGGCTTTCCTCCATGAAACAGAGAAACCAGTTATATACCGCGATTTCAAGACTTCCAACATCCTGTTGGATTCGGATTACACGG CAAAGCTGTCTGATTTTGGGCTGGCAAAAGACGGTCCAGAAGGAGAAGAGACTCACATCATAACTAGGGTAATGGGCACACAAGGATATGCCGCCCCTGA ATACGTCATGACTGGTCACCTCACGACGATAAGCGACGTATACAGTTTCGGGGTAGTGTTGTTAGAGCTACTAGCTGGACGTCGGTCAATGGACGAGACA AGGGCATACAAGGAGCAAAGTCTTGTGGGATGGGGAAGACAATTGTTAAAAGACCCTAACAAGCTTGGTCGTGTTATGGATCCTAGGCTGGAAGGACAAT ATTCTGAGAGTGGGGCTCAAAAGGCTGCCGCACTCGCCTACAAATGTTTGAGCCACCATCCTAAGCACAGGCCCACAATGACCCAAGTCGTCGCTGTCCT CGACTCTATCCAGAACCAGGACGATGATGATGTTGACACATTTGCCAATTCTGGTCCTTTCGTTTACATTGTTCCCAACGAAAACGTTGTTGGCTTTGAT GATGCTGAGACCGTATCTGAAAGTGGCCGGAATAGATCATTTAATTATCGTCGTCGCCGACATGACCAGTACCGTAAAGGAGACGGCGGCAGTTTCAAAC ATCGAATCAAGCTACCCTTGTCACAACTGGTTAAGTATTCGGACTCGGTTCTTTATGACACGTTAGAGAATGGTAATGATCATTCTCCTGCAACTCTTAA GAAAGAACAGCTATAG
AA sequence Show only first row Show all	>Lus10011930 pacid=23146537 polypeptide=Lus10011930 locus=Lus10011930.g ID=Lus10011930.BGIv1.0 annot-version=v1.0 MKSTWKSMICGCSSFNYRETSPLPELVEEDEDEEEGVVKKTMSSTSSFSRMSLSDVSNPKLCMEDISNSFVGSKLYVFTFAELRLITQNYARVNLLGEGG FGPVYKGFVDDKVKPGLKAQPVAVKSLDLDGLQGHKEWVAEIIFLGQLRHPHLVKLIGYCYEEEQRALVYEYMPRGSLENQLFRRFSAALPWSTRMKIAL GAAKGLAFLHETEKPVIYRDFKTSNILLDSDYTAKLSDFGLAKDGPEGEETHIITRVMGTQGYAAPEYVMTGHLTTISDVYSFGVVLLELLAGRRSMDET RAYKEQSLVGWGRQLLKDPNKLGRVMDPRLEGQYSESGAQKAAALAYKCLSHHPKHRPTMTQVVAVLDSIQNQDDDDVDTFANSGPFVYIVPNENVVGFD DAETVSESGRNRSFNYRRRRHDQYRKGDGGSFKHRIKLPLSQLVKYSDSVLYDTLENGNDHSPATLKKEQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10011930 [exp]	0	1
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10036280 [exp]	6.7	0.8928
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10024647 [exp]	7.5	0.8709
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10031510 [exp]	9.4	0.9111
AT5G67400		RHS19	root hair specific 19 (.1)		Lus10032035 [exp]	10.3	0.9049
AT3G13620			Amino acid permease family pro...		Lus10013757 [exp]	11.2	0.9030
					Lus10021100 [exp]	12.0	0.8845
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10017527 [exp]	14.7	0.8663
AT3G47000			Glycosyl hydrolase family prot...		Lus10005871 [exp]	16.6	0.8989
AT1G63420			Arabidopsis thaliana protein o...		Lus10024519 [exp]	17.3	0.8778
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015966 [exp]	22.4	0.8869

Compare expression of checked genes

Lus10011930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.