Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20590 536 / 0 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT5G06700 416 / 2e-140 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT1G60790 407 / 6e-138 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT3G12060 403 / 4e-136 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT3G62390 375 / 2e-126 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G49340 350 / 1e-116 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT5G19160 309 / 8e-101 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G06080 308 / 2e-100 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G06230 276 / 2e-89 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT2G30010 275 / 3e-88 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027637 [exp] 834 / 0 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10021066 [exp] 416 / 3e-140 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10013035 [exp] 386 / 2e-129 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10002430 [exp] 372 / 1e-124 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10029126 [exp] 347 / 6e-115 AT1G60790 527 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10037726 [exp] 327 / 8e-108 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10034041 [exp] 313 / 3e-102 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10041219 [exp] 309 / 6e-101 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10004159 [exp] 310 / 5e-100 AT5G06700 552 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G071500 [exp] 554 / 0 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 544 / 0 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.006G193900 [exp] 400 / 3e-134 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 399 / 9e-134 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.010G043300 [exp] 391 / 1e-131 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.008G108500 [exp] 384 / 1e-129 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.T171301 [exp] 383 / 1e-129 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.002G195800 [exp] 383 / 3e-128 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.001G010900 [exp] 374 / 1e-124 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.008G203900 [exp] 308 / 1e-100 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10011932 pacid=23146528 polypeptide=Lus10011932 locus=Lus10011932.g ID=Lus10011932.BGIv1.0 annot-version=v1.0 ATGGCTGAGTGGGCTACCTTTTCCTTGGGCAATCGTTCCACTTTAACCATTCTCCTCTCCATTTCTCTCTTCCTCTCCGTAATCCTAATCTCCAATCGAC GCTATGTCCAGCAATCCCTTGACGATTTCTTCCCTCCAGTCCGCCTCACTGTCTCTGCTCCACCGCCCCGCTCTGCCGTCCCAGATATCAGCCAGCAACC TAAACCCGCCGTAATCGATCAAGAGTCGGAGCTTCTTCCGCGGCCCACTGTTGGGGAGAAGAACAATGTAGAACCCGTAGTAGATTCTGTACAACACAAT GATGCCACATCGGAGGTGGAGAAAGTAATGCGGGAGAGTCTCAAGGACTGCAATCTGTACATGGGAAGTTGGGTGAGAGATGAAACTTATCCGATCTACA AACCCGGCTCTTGCCAATACGTTGATGAAGCTTTCGATTGCCAAGCTAACGGGAGGCCAGATTCTGACTATCTCCGTTGGCGTTGGAAGCCCGACGGATG CGATCTCCCCAGGTTTAACGCAACAGATTTCTTGGAGAGACTAAGGGGTAAGAAACTGCTGCTTGTTGGGGACTCTGTGAACAGAAACCAATTTGAATCA ATGTTATGTCTCCTCCGGGAAGGCCTGCCTGATAAAACTAGAATGTTTGAGATCAATGGCCACAAAATTACCAAGGGCCGGGGTTCCTATGTCTTCAAGT TTCTGGATTTTAACTGTTCAGTGGAATATGCACTGTCTCATTACCTTGTCAAAGAAGGGGTTCGGGTTAACGGGCAAGGAAACTCTAATCCAACTCTGTC CATCGATCAAGTCGGCAAGACTTCGAAGAAATGGAAGCGAGCTGACATTATTATCTTCAATACTGGGCATTGGTGGAGCCATAGGAAAACTTCACGAGGG GTAAATTACTACAAAGAAGGTGGTTATATCTACCCACACCTTGATGCGAATGAGGCTTACAGACGATCCCTACAGACTTGGGGGAGGTGGATAGATCAAA ATTTGAATGCGACAAGGCAATTGGTGTTCTATCGTGGATACTCCACGCCACATTTCCGAGGTGGAGAATGGGACTCGGGAGGGTCGTGCTACAATGAAAA AGAACCGATATTGAGTGACCAGGAAGCCATTGTGAAGAGCTACCCTGGGAAAATGAAGGTAGTGGAGGAGGTGATAAAGGGGATGAAGTTTCCGGTGAGA CTGCTGAATGTAACGAGGCTTACCAATTTTAGGAAGGATGGCCATCCATCAGTTTATAGAAAGAATAGGAGCACAAATAGTAGTAGTAAAAGGAAAGTGC AGGATTGTAGCCATTGGTGTCTACCTGGTGTGCCCGATGCATGGAACGAGCTCATTTATGCAAACCTCATCATGAAATGA
AA sequence Show only first row Show all	>Lus10011932 pacid=23146528 polypeptide=Lus10011932 locus=Lus10011932.g ID=Lus10011932.BGIv1.0 annot-version=v1.0 MAEWATFSLGNRSTLTILLSISLFLSVILISNRRYVQQSLDDFFPPVRLTVSAPPPRSAVPDISQQPKPAVIDQESELLPRPTVGEKNNVEPVVDSVQHN DATSEVEKVMRESLKDCNLYMGSWVRDETYPIYKPGSCQYVDEAFDCQANGRPDSDYLRWRWKPDGCDLPRFNATDFLERLRGKKLLLVGDSVNRNQFES MLCLLREGLPDKTRMFEINGHKITKGRGSYVFKFLDFNCSVEYALSHYLVKEGVRVNGQGNSNPTLSIDQVGKTSKKWKRADIIIFNTGHWWSHRKTSRG VNYYKEGGYIYPHLDANEAYRRSLQTWGRWIDQNLNATRQLVFYRGYSTPHFRGGEWDSGGSCYNEKEPILSDQEAIVKSYPGKMKVVEEVIKGMKFPVR LLNVTRLTNFRKDGHPSVYRKNRSTNSSSKRKVQDCSHWCLPGVPDAWNELIYANLIMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Lus10011932 [exp]	0	1
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10016492 [exp]	1.7	0.9526
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10004868 [exp]	2.8	0.9546
AT5G62580			ARM repeat superfamily protein...		Lus10036647 [exp]	3.0	0.9380
AT5G46570		BSK2	BR-signaling kinase 2 (.1)		Lus10035136 [exp]	6.3	0.9116
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10013680 [exp]	6.6	0.9531
AT3G56130			biotin/lipoyl attachment domai...		Lus10009843 [exp]	6.9	0.9523
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10014147 [exp]	7.5	0.9415
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042246 [exp]	10.0	0.9271
AT1G51160			SNARE-like superfamily protein...		Lus10027541 [exp]	10.5	0.9132
AT3G56130			biotin/lipoyl attachment domai...		Lus10040959 [exp]	11.0	0.9505

Compare expression of checked genes

Lus10011932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.