Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56890 801 / 0 Protein kinase superfamily protein (.1) AT2G20300 467 / 2e-148 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT4G02010 375 / 2e-114 Protein kinase superfamily protein (.1) AT1G20650 317 / 3e-97 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT5G13160 318 / 8e-97 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT3G20530 313 / 6e-96 Protein kinase superfamily protein (.1) AT5G02800 313 / 6e-96 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G18610 316 / 3e-95 Protein kinase superfamily protein (.1.2) AT1G61860 308 / 4e-94 Protein kinase superfamily protein (.1) AT3G28690 306 / 1e-93 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027635 [exp] 1221 / 0 AT5G56890 887 / 0.0 Protein kinase superfamily protein (.1) Lus10011917 [exp] 585 / 0 AT2G20300 951 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10022848 [exp] 468 / 9e-149 AT2G20300 912 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10037526 [exp] 362 / 8e-110 AT4G02010 865 / 0.0 Protein kinase superfamily protein (.1) Lus10011466 [exp] 374 / 1e-107 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015756 [exp] 328 / 2e-100 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10019621 [exp] 318 / 8e-98 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1) Lus10040050 [exp] 318 / 8e-98 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10023473 [exp] 313 / 8e-96 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068100 [exp] 918 / 0 AT5G56890 801 / 0.0 Protein kinase superfamily protein (.1) Potri.006G152000 [exp] 881 / 0 AT5G56890 846 / 0.0 Protein kinase superfamily protein (.1) Potri.003G039100 [exp] 718 / 0 AT5G56890 701 / 0.0 Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 599 / 0 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.002G254600 [exp] 476 / 2e-151 AT2G20300 947 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.014G119100 [exp] 388 / 4e-119 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 386 / 3e-118 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 333 / 4e-102 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 324 / 5e-100 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 327 / 6e-100 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10011933 pacid=23146536 polypeptide=Lus10011933 locus=Lus10011933.g ID=Lus10011933.BGIv1.0 annot-version=v1.0 ATGGGGACTGCCAGCCTGTTGTTGCTGGTGGAGCTCTGTCTCATTGCCTCTGTTTTCAACCTTGACGGATCTACAGGATTCAGTACATCACCATCTCCTG GAAGCATAAGTCCGGTCTATCCAGTTAGTCCTTTCGAACGTCATGCACCGTGCTCAGAGGCCTTCCTTGTTGATGGGCTTATGATAGACTCTCCAGTTGA ATTAGCTCCTGCTCCAGCACATGAAGCAATTTCAGGGCAGGTACCATCCAACCATCCAATTCCAATTGGTTCACCGCCTTCTAGTACTATTCGTCCACCT TCAATTATTCCAGGAGATGCACCCTCTGAATCGCCAAGCCTTTCAGTTGTACGTAGATCACATAGTGGAGCTTCTCCGCCCCAAAGTTTTGAACGAGATG TAGCACCTATGCCATCAGATGTTTCATTCCTACCTCCGCTCCCTAATATCTCTCCTCCACTAGAGACTCGAGAAGGAAATGTAGCACCTATGCCATCTAA CACTTCTGGTGGAAGTATTTCCTATGCACCTCCATTGCTTAACATGGCTCCTCCACCCCAGAATGTATCACCTATGCCATCTACTAACTCTTCATTGCAT GGTATAGCTCCTCCACCCCCGATTTCTCCAGGACAAGTAGCACCTATGCCTTCAGGAGCAATCGGTTCAATTGTTCCTCCAGCACATAGTGTAGTTCCTC CTCCCCCAATTTCTCAAGGACATGTACCACCTATGCCTTCTGGAGAAAGTTCTTCATTGGTACCTCCAATGGCAAGTGTGGCTCCTCCACCTCAGATTTC TGAAGTGCCTCCTGCACGTAGTGTAGCTCCTCCATCCCCAGTCTTTCAAGGACAAGTAGCACCTACGCCTTCAAAAACCTCTGGAGAAAATGGTCCATTA GTACCTCCACCAAATAGTGTAGCTCCTCCACCCCAGAATTCCGAGGGAAAACTTGCACCTCCGCCATCAAGCGATAGCATTAGCATAGCCCCTCCACCAC ATATCATTCAAGGAACAGCAGCACCTATGCCATCAAATGATACCGGAGGAAAGGAACCTGGTGAAAAGACTCCTGCCTCCATGCCAGCTTCAGCACCTCC AACTAAAGCATTACCAAGTATACCCTTCATCCACCCTGGTGTACCGCAACATTCGACTCTGAGTGCTCATCAGAAGAATATGTCGTTTTATGGTTCTCCT CTTGAAAAACCAGAACCAGTTGCATTACCTCCAAGGACATTGCACAGGAAGAAACCAGCTATCCGTACACTTGCACCAGAAGCCATTATCCCATCTCTCC CGCCTGATCCTGATGTCTCATCTCCATCATCTACTCCTGGAATGACCGATTGGAAAAGATATGGAATTCCAGTTACTGCACCCTCAACTCAAATACACAA GCCTTTGCCACCTAGAATCCATTCACGCACTAAAGCTTCTTTTCCCGCTGTTGCTCCTTCTGAGCATCGGACAGTGAGGCATTCAAATGAACCTCTTGCT CCATCTGTGCCTTTCCATAGTTCTCCTCGGTTCATAACGCATCAGTCTCCTTCGAATTCACCATCTACCTCTTCTCAAAAGAAACACAGTACAAGAGGTG GAATGAGTAATGGTACTCCTGCATCATCATATGTTATACCTCCTCGCTCATCAGAAGAGCCAGCACTCCCTCCATCTCTTCCAACTACCAGGAGAACCCA CTTTGCTTCTCCAACCAGCAATCCAGGTTTCTGTATCGCAGGTCCGGCTTCTCCTTCCCATCATTCCATCCCTAAACCAGATTTAGGGGTTTCACCAGTT CCCTGGCCATCCAGTATAGCACCTAACTGGACCACAATACCGATTCTTCCACCAAAAGATTCTCCGAGTTCTCCATTGAAAAGTCCTATGCCCAAACTTC CAACAATCCATGCACTGCCACCTCCACCTCCCAATCAAGATTGTTCGACGATTGTCTGCATGGAACCATATGCTAATACTCCACCAGGCTCTCCATGTGG ATGTGTATTGCCCATGCAAGTTGGACTACGCCTTAGTGTTTCTCTCTACACCTTTTTCCCGTTGGTTTCTGAATTGGCTCAAGAGATCGCTGCCGGTGTG TTTATGAAACAAAGTCAAGTCCGGATTATGGGAGCCAATGCCGCTAGCCAGGAACCTGAGAAGACCATTGTCCTCATTGACTTGGTTCCACTTGGACAAA AGTTTGACAATACAACTGCTTTATTGACATATCAAAGATTCTGGCAGAAACAAGTAGTGATACAGCTTTCTTTCTTTGGTGACTATGAAGTACTGTACGT GCGGTATCCAGGTTTACCCTCATCGCCACCTTCATCAATTTCCGGAATTACTATCATTGATGATGGGCCATATTCTGGCAATGGAAACAATGCAAGAACG ATAAAGCCCCTAGGAATTGATGTATCAAAAAGACAACAAAAAGATGGGCTTAGTGGTAGCATGATTGCTATCATCGCCCTTTCAGCTTCCATCGTTGTAA TCTTGAGCTCTGCAGCTGCATGGATATTTTTTTTGAGGAATCGAGGCCATGGCAGGGACCCAACTCCGACATTGGCACCTATACATGCTTCTGTTGCAAA ACCCTTAGGGACTATTGCATCTGCTCTTAGAAGTGGTCTGAGTTCTAACTCACTGTCATTTGGCTCTAGCATTGCTCCATATACAGGATCTGCCAAGACG TTCAGTGCAAGTGATATTGAGAGGGCGACAAATAATTTTGATTTGTCAAGACTGCTTGGGGAAGGTGGATTTGGGCGTGTTTATAGTGGTGTTCTTGAAG ATGGGACCAAAATCGCAGTAAAAGTCCTGAAAAGAGATGACCAACAAGGTGGTCGAGAATTCTTAGCAGAAGTTGAGATGCTTAGCCGCCTTCACCACCG AAATCTAGTTAAGTTGATTGGAATATGCACAGAAGAGTCTGCACGATGCCTCGTTTATGAACTAGTACCTAATGGCAGCGTGGAATCTCATTTGCATGGG GATGATGAGGAATCTGCACCATTTGATTGGGATGTCCGGATCAAGATAGCACTTGGTGCTGCTAGAGGTCTGGCTTATCTTCATGAGGATTCGAGTCCCC GTGTTATCCACAGAGATTTCAAATCCAGCAACATCTTATTGGAAAGTGATTACACACCAAAAGTTTCTGATTTTGGCTTGGCTCGAAGTGCCCTGGATGA GGAAACCAGCCATATATCTACACGTGTCATGGGGACGTTTGGGTATGTAGCTCCAGAGTATGCAATGACCGGTCATCTTCTAGTGAAAAGTGACGTATAC AGCTATGGGGTGGTCCTTCTTGAGCTTCTAACTGGAAGAAAGCCAGTAGATATGTTGCAACCGGCAGGTCAAGAGAATCTAGTAGCATGGGCACGACCGC TTCTAACAAGCAAAGAAGGGCTTGCAATGATGATAGATCCATCTCTAGGCCCTGATGTGCCCTTCGATAGTGTGGCCAAGGTTGCAGCAATTGCATCAAT GTGTGTGCAACCGGAGGTGTCTCACCGTCCATTCACGGGCGAAGTAGTTCAAGCATTGAAACTGGTATCCAATGAATGTGATGTGGCAAAGGAAGGAGGG TCAGTAAGTTTCAGCCAAGATTTATCCCTTGACATGGAGGATGCTGGGGAGAGCACCACATCAGGCCAGGGGCAGCCATTCAACAACCAAATCATAGGGC CAAACTATGAGTCTGATATCGAGAGAGGCGTGGCATTGTCGCATATGTTTTGTACGTCAGAGCGATTCAGTGGGCAACCGCAATCTGCATCGTTCAGGAG GTACTCGAGTTCGGGACCACTGAGGCCCGGAAAAGGAAGAGAGTGGTGGCAGAGAATGAGACGATTGAGAGGGGAAAGTGTGAGTGAACACGGGGTGATG TTCAGACAATGGGCAGGTTCATATTGA
AA sequence Show only first row Show all	>Lus10011933 pacid=23146536 polypeptide=Lus10011933 locus=Lus10011933.g ID=Lus10011933.BGIv1.0 annot-version=v1.0 MGTASLLLLVELCLIASVFNLDGSTGFSTSPSPGSISPVYPVSPFERHAPCSEAFLVDGLMIDSPVELAPAPAHEAISGQVPSNHPIPIGSPPSSTIRPP SIIPGDAPSESPSLSVVRRSHSGASPPQSFERDVAPMPSDVSFLPPLPNISPPLETREGNVAPMPSNTSGGSISYAPPLLNMAPPPQNVSPMPSTNSSLH GIAPPPPISPGQVAPMPSGAIGSIVPPAHSVVPPPPISQGHVPPMPSGESSSLVPPMASVAPPPQISEVPPARSVAPPSPVFQGQVAPTPSKTSGENGPL VPPPNSVAPPPQNSEGKLAPPPSSDSISIAPPPHIIQGTAAPMPSNDTGGKEPGEKTPASMPASAPPTKALPSIPFIHPGVPQHSTLSAHQKNMSFYGSP LEKPEPVALPPRTLHRKKPAIRTLAPEAIIPSLPPDPDVSSPSSTPGMTDWKRYGIPVTAPSTQIHKPLPPRIHSRTKASFPAVAPSEHRTVRHSNEPLA PSVPFHSSPRFITHQSPSNSPSTSSQKKHSTRGGMSNGTPASSYVIPPRSSEEPALPPSLPTTRRTHFASPTSNPGFCIAGPASPSHHSIPKPDLGVSPV PWPSSIAPNWTTIPILPPKDSPSSPLKSPMPKLPTIHALPPPPPNQDCSTIVCMEPYANTPPGSPCGCVLPMQVGLRLSVSLYTFFPLVSELAQEIAAGV FMKQSQVRIMGANAASQEPEKTIVLIDLVPLGQKFDNTTALLTYQRFWQKQVVIQLSFFGDYEVLYVRYPGLPSSPPSSISGITIIDDGPYSGNGNNART IKPLGIDVSKRQQKDGLSGSMIAIIALSASIVVILSSAAAWIFFLRNRGHGRDPTPTLAPIHASVAKPLGTIASALRSGLSSNSLSFGSSIAPYTGSAKT FSASDIERATNNFDLSRLLGEGGFGRVYSGVLEDGTKIAVKVLKRDDQQGGREFLAEVEMLSRLHHRNLVKLIGICTEESARCLVYELVPNGSVESHLHG DDEESAPFDWDVRIKIALGAARGLAYLHEDSSPRVIHRDFKSSNILLESDYTPKVSDFGLARSALDEETSHISTRVMGTFGYVAPEYAMTGHLLVKSDVY SYGVVLLELLTGRKPVDMLQPAGQENLVAWARPLLTSKEGLAMMIDPSLGPDVPFDSVAKVAAIASMCVQPEVSHRPFTGEVVQALKLVSNECDVAKEGG SVSFSQDLSLDMEDAGESTTSGQGQPFNNQIIGPNYESDIERGVALSHMFCTSERFSGQPQSASFRRYSSSGPLRPGKGREWWQRMRRLRGESVSEHGVM FRQWAGSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56890			Protein kinase superfamily pro...		Lus10011933 [exp]	0	1
AT2G15730			P-loop containing nucleoside t...		Lus10012072 [exp]	1.0	0.8633
AT5G35570			O-fucosyltransferase family pr...		Lus10021557 [exp]	1.4	0.8593
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Lus10033080 [exp]	2.4	0.8563
AT5G56890			Protein kinase superfamily pro...		Lus10027635 [exp]	3.9	0.8402
AT5G41140			Myosin heavy chain-related pro...		Lus10008012 [exp]	6.3	0.8548
AT2G16595			Translocon-associated protein ...		Lus10026282 [exp]	7.7	0.8356
AT2G33205			Serinc-domain containing serin...		Lus10023690 [exp]	8.9	0.7546
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10034753 [exp]	9.2	0.8142
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10016697 [exp]	9.4	0.8246
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10034184 [exp]	12.0	0.8150

Compare expression of checked genes

Lus10011933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.