Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48030 474 / 8e-166 GFA2 gametophytic factor 2 (.1) AT1G28210 258 / 6e-82 ATJ1 DNAJ heat shock family protein (.1.2) AT2G22360 228 / 5e-70 DNAJ heat shock family protein (.1) AT4G39960 219 / 2e-66 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G80030 214 / 8e-64 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G17830 194 / 4e-56 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G22060 139 / 1e-36 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G44110 124 / 2e-31 ATJ3 DNAJ homologue 3 (.1.2) AT3G62600 117 / 4e-29 ATERDJ3B DNAJ heat shock family protein (.1) AT2G20560 99 / 8e-23 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027634 [exp] 840 / 0 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10035855 [exp] 676 / 0 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 665 / 0 AT5G48030 516 / 0.0 gametophytic factor 2 (.1) Lus10020949 [exp] 252 / 3e-80 AT1G28210 407 / 2e-141 DNAJ heat shock family protein (.1.2) Lus10000631 [exp] 227 / 2e-69 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023148 [exp] 224 / 3e-68 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10023122 [exp] 209 / 6e-62 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10011484 [exp] 208 / 1e-61 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10035920 [exp] 199 / 8e-59 AT2G22360 619 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G065500 [exp] 603 / 0 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 580 / 0 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.005G160200 [exp] 275 / 2e-87 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.007G094900 [exp] 231 / 5e-71 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 222 / 2e-67 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 200 / 9e-59 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.015G035300 [exp] 174 / 1e-48 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.008G018800 [exp] 151 / 5e-41 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.009G015700 [exp] 150 / 1e-40 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 145 / 1e-38 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00684 [flax] [poplar] DnaJ_CXXCXGXG DnaJ central domain CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011934 pacid=23146543 polypeptide=Lus10011934 locus=Lus10011934.g ID=Lus10011934.BGIv1.0 annot-version=v1.0 ATGGCTCGTCGGCGGGTTGGTTCCCTTGCTAGCTGCGTTCTCCCTTCTTTGCTTCGTCAAGATTCTCATCATTATCTCCATAGAAGTATGCTCAATTGGA ATTATAGGGGATTAAGTGCAGCTTGGGGTTGCAATCGAGCTGGGTTCAGCAATTATATTCCGCAAAATGCTGACCGGAAAAATTGGTCGCCATTTGGAGC TATTAATACCAATCTCTGTGGAGTGAGGTTAATTCATGGCACAGCGTGTACCTCAAAAGATTACTACGACACACTTGGTGTGAGCAAGAATGCTACTCAA TCAGATATTAAGAAATCATACTATCAGCTAGCAAAGAAATTGCATCCAGATAGTAACAAAGATGACCCTGAAGCTCAGCAGAAGTTCCAAGAAGTTTCTA AGGCATATGAGGTTTTAAAAGATGAAGAAAAGCGTTCCCAATATGATCAGCTGGGACATGAGACTTTCGAAAATCAAGGTGACTCTGGTTTCCACCCTGG CGGGATGGGATTTGATCATCCATTTGGGGACTTCTTCAGGATGGACGATGTGTTTGGCAGCATGTTTAAGCAGCGGCTTGGTGGCGAAGATGTCAAGGTT GCAATTGAAGTATCGTTCATGGAAGCTGTTCAGGGTTGTACGAAAAATATCACATTTCAAACTTATATTCCTTGTGAAACATGCCGTGGTGAAGGGTTTC CTCCTGGTGTGAAACCGCAAATTTGTAAGCGATGTAAAGGGACTGGCACGGCTTACACTCAAAAAGGATTTTTCAGTGTTCAGCACCCCTGTAATCAATG TGGCGGTGCAGGACAAACTGTATCGAGCCTTTGCAGATCGTGTCAAGGACGTAGGGTACTACGAGGGTCAAAATCAATCAAATTGGATATCATGCCAGGA GTTGATGATAATGATACGATCAAGGTACCTAGGAGTGGTGGAGCAGATCCTGACAGAAACCAACCTGGTGATCTCCTCGTCACCATAAAGGTTCGTGAGG ATCCTGTCTTCCGCAGAGAGGGTTCTAGCATACATGTCGATGCTGTTTTGAGTGTTACTCAGGCAATTTTAGGGGGGACAATCAAAGTCCCGACGCTTAC TGGAGATGTTGTGCTCAAGGTTCGTGCTGGCACTCAACCTGGTCAAAAAGTGGTGCTGAAGAAAAAAGGAATTAAAGCACGTAACTCGTATACTTATGGC GATCAGTTTGTGCACTTCAATGTCAGCATCCCAACTAGTATAAGCCCAAGGCAACGTGAATTGCTGGAGGAGTTCAGCAAGGAAGAAGAGGGGGAATGCA AGAAACATGCAGCTGGGGCATCGGGTTAA
AA sequence Show only first row Show all	>Lus10011934 pacid=23146543 polypeptide=Lus10011934 locus=Lus10011934.g ID=Lus10011934.BGIv1.0 annot-version=v1.0 MARRRVGSLASCVLPSLLRQDSHHYLHRSMLNWNYRGLSAAWGCNRAGFSNYIPQNADRKNWSPFGAINTNLCGVRLIHGTACTSKDYYDTLGVSKNATQ SDIKKSYYQLAKKLHPDSNKDDPEAQQKFQEVSKAYEVLKDEEKRSQYDQLGHETFENQGDSGFHPGGMGFDHPFGDFFRMDDVFGSMFKQRLGGEDVKV AIEVSFMEAVQGCTKNITFQTYIPCETCRGEGFPPGVKPQICKRCKGTGTAYTQKGFFSVQHPCNQCGGAGQTVSSLCRSCQGRRVLRGSKSIKLDIMPG VDDNDTIKVPRSGGADPDRNQPGDLLVTIKVREDPVFRREGSSIHVDAVLSVTQAILGGTIKVPTLTGDVVLKVRAGTQPGQKVVLKKKGIKARNSYTYG DQFVHFNVSIPTSISPRQRELLEEFSKEEEGECKKHAAGASG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10011934 [exp]	0	1
AT2G21237			unknown protein		Lus10031077 [exp]	3.6	0.8310
AT1G69800			Cystathionine beta-synthase (C...		Lus10013265 [exp]	5.7	0.8539
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10014337 [exp]	6.9	0.8475
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10033076 [exp]	7.3	0.8699
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10034565 [exp]	9.8	0.8394
AT3G10530			Transducin/WD40 repeat-like su...		Lus10032289 [exp]	10.0	0.8045
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10004034 [exp]	10.2	0.8278
AT4G34090			unknown protein		Lus10004995 [exp]	10.6	0.7788
AT3G19508			unknown protein		Lus10013875 [exp]	10.7	0.7783
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Lus10003791 [exp]	12.0	0.7981

Compare expression of checked genes

Lus10011934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.