Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37790 143 / 3e-42 HD HAT22 Homeobox-leucine zipper protein family (.1) AT3G60390 137 / 2e-39 HD HAT3 homeobox-leucine zipper protein 3 (.1) AT5G47370 135 / 6e-39 HD HAT2 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT2G22800 134 / 1e-38 HD HAT9 Homeobox-leucine zipper protein family (.1) AT4G16780 134 / 2e-38 HD ATHB2, HAT4, ATHB-2 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) AT5G06710 134 / 4e-38 HD HAT14 homeobox from Arabidopsis thaliana (.1.2) AT4G17460 132 / 5e-38 HD HAT1 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT2G44910 130 / 1e-36 HD ATHB4, ATHB-4 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, homeobox-leucine zipper protein 4 (.1) AT2G01430 112 / 4e-30 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, homeobox-leucine zipper protein 17 (.1) AT1G70920 103 / 9e-28 HD ATHB18 homeobox-leucine zipper protein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027633 [exp] 221 / 7e-74 AT4G37790 138 / 3e-40 Homeobox-leucine zipper protein family (.1) Lus10021064 [exp] 135 / 1e-39 AT5G06710 265 / 3e-88 homeobox from Arabidopsis thaliana (.1.2) Lus10004759 [exp] 137 / 3e-39 AT4G16780 305 / 1e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004377 [exp] 135 / 9e-39 AT4G16780 265 / 1e-87 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10029293 [exp] 136 / 2e-38 AT5G06710 274 / 5e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10016254 [exp] 136 / 2e-38 AT5G06710 274 / 4e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10004161 [exp] 135 / 3e-38 AT5G06710 263 / 5e-86 homeobox from Arabidopsis thaliana (.1.2) Lus10007849 [exp] 134 / 4e-38 AT4G16780 303 / 6e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10040175 [exp] 133 / 7e-38 AT4G16780 280 / 1e-93 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G133100 [exp] 140 / 4e-42 AT5G06710 163 / 3e-49 homeobox from Arabidopsis thaliana (.1.2) Potri.007G008200 [exp] 142 / 7e-42 AT4G37790 299 / 3e-102 Homeobox-leucine zipper protein family (.1) Potri.005G147100 [exp] 137 / 9e-40 AT4G37790 270 / 1e-90 Homeobox-leucine zipper protein family (.1) Potri.006G071600 [exp] 134 / 1e-39 AT5G06710 163 / 4e-49 homeobox from Arabidopsis thaliana (.1.2) Potri.009G023600 [exp] 139 / 2e-39 AT5G06710 243 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.001G155100 [exp] 136 / 2e-39 AT4G16780 335 / 6e-116 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.003G079800 [exp] 136 / 3e-39 AT4G16780 320 / 8e-110 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.001G229700 [exp] 137 / 5e-39 AT5G06710 269 / 4e-88 homeobox from Arabidopsis thaliana (.1.2) Potri.016G059000 [exp] 135 / 1e-38 AT5G06710 241 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.014G045100 [exp] 134 / 1e-38 AT3G60390 263 / 5e-87 homeobox-leucine zipper protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10011935 pacid=23146545 polypeptide=Lus10011935 locus=Lus10011935.g ID=Lus10011935.BGIv1.0 annot-version=v1.0 ATGAGAAATTACTCACTCTCTTCATCTGTGTGGCCGCCAATGCCAAGCGCCGTTTGTCCGCCGATGCCCTTTGCCCACCACCCGCCACCTCAGTTTTCCG AGTACTACTACCAGCAGAATCATCAACACTGTCATGGATGCTGCAACACTGCCCTTGTACTGGATTCGCATCGAAAATCTTCACCGTCGTCAACTGTCGG AGGAGGGGATGATGATCCACAACGCCGTATCTACGGCGGAAGAAAGAAGTTGAGGCTGACTAAAGAGCAATCCACATTGCTGGAGAACACATTTAATGTC CATAATACCTTCACCCAGTCACAGAAACAGGCACTTGCCCACCGCCTCAATTTAACTCCACGACAAGTCGAAGTCTGGTTCCAAAACAGAAGGGCCAGGA CGAAACTGAAGCAAACTGAGGTGGACTGTGAGTTTCTGAAGAAATGCTGCGACAGCTTAAGTAACGAGAACAGGAAACTAAAGAAGCAAATCCTGGACCT GCGTTCGGGATGTGGCTACAACATTACATCGTCGCCGGCGCCAGAGCTGGTGATATGCCGTTCGTGCCAGAAAAGAAACAGTAGGGAGTTACATTACATG TAA
AA sequence Show only first row Show all	>Lus10011935 pacid=23146545 polypeptide=Lus10011935 locus=Lus10011935.g ID=Lus10011935.BGIv1.0 annot-version=v1.0 MRNYSLSSSVWPPMPSAVCPPMPFAHHPPPQFSEYYYQQNHQHCHGCCNTALVLDSHRKSSPSSTVGGGDDDPQRRIYGGRKKLRLTKEQSTLLENTFNV HNTFTQSQKQALAHRLNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCDSLSNENRKLKKQILDLRSGCGYNITSSPAPELVICRSCQKRNSRELHYM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Lus10011935 [exp]	0	1

Compare expression of checked genes

Lus10011935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.