Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19520 558 / 0 ATMSI4, ACG1, NFC4, NFC04, FVE MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) AT4G29730 531 / 0 MSI5, NFC5 nucleosome/chromatin assembly factor group C5 (.1) AT2G16780 151 / 8e-41 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT4G35050 150 / 2e-40 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 142 / 9e-38 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G19540 98 / 8e-22 Transducin family protein / WD-40 repeat family protein (.1) AT3G49660 67 / 7e-12 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 59 / 3e-09 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 59 / 6e-09 TAF5 TBP-associated factor 5 (.1) AT1G29260 57 / 1e-08 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027632 [exp] 650 / 0 AT2G19520 815 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10005074 [exp] 156 / 7e-43 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 155 / 2e-42 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10020916 [exp] 139 / 2e-36 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033460 [exp] 139 / 2e-36 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020917 [exp] 125 / 2e-31 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033459 [exp] 120 / 1e-29 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10025341 [exp] 96 / 1e-20 AT2G19540 668 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Lus10024403 [exp] 91 / 2e-19 AT2G19540 659 / 0.0 Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068200 [exp] 578 / 0 AT2G19520 812 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.006G151800 [exp] 577 / 0 AT2G19520 814 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.003G038800 [exp] 512 / 3e-180 AT2G19520 720 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.009G135100 [exp] 169 / 2e-47 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G175300 [exp] 160 / 3e-44 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.002G216200 [exp] 141 / 3e-37 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G179700 [exp] 139 / 2e-36 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G094000 [exp] 97 / 3e-21 AT2G19540 623 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.005G074400 [exp] 96 / 4e-21 AT2G19540 631 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.007G009500 [exp] 66 / 2e-11 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10011936 pacid=23146504 polypeptide=Lus10011936 locus=Lus10011936.g ID=Lus10011936.BGIv1.0 annot-version=v1.0 ATGGAAGGTCAAGTCCCCAAGAAGCGAGGCCGGAAGCCAAAGTCCAAGGACGAGAAAGACCACCAGCAGCAGCAGCAGCAAGGCAAAATGAAGGAAGGGA AGCGGGGCCAGCACGCTGCTTCAGTTGTGATAGGAGGCGAGGCCAGCACGCTGCTTCAGTTGACGAGAAGTACACTCAGTGGAAGTCTCTCGTTCCAGTT CTCTACGACTGGCTTGCTAACCACAACCTTGTCTGGCCTTCCCTCTCTTGCCGGTACATTCTATAACTCCTTCGCTTTTCTCTCGGCGCCGTCCGACTTT CTTTCATTTTCTAGGGTTCTGGGTGTGGCATTGTTATTGGAGTGTGGACTGGGAGGGTTTCTTGCTTTCTCGTTTAGGAGTATGAGGTCGTCCCCACAGA ATACCCGCATAGTGGCTACTCATACCGACAGTCCTGATGTTCTTATATGGGATGTAGAAACACAACCAAATCGTCATGCTGTTCTTGGAGCTACAAATTC TCGGCCTGATCTGATCCTGACTGGTCACCAAGATAATGCAGAATTTGCCCTCGCAATGTGTCCAACTGAACCCTTTGTGCTCTCTGGAGGGAAGGATAAG TCGGTAGTTTTGTGGAGTATCCAGGACCATATAACAGCCTCTGCCTCTGACCCAGCTTCAGGAAAGTCTCCAGGATCTGCTGGATCCATCATTAAAAGAA GTGAAGGGAATGATAAAGCATCAGATGGACCAACTGTTGGACCTAGAGGGATTTATCAGGGCCATGAGGATACAGTTGAAGATGTGGCATTCAATCCGTC CAGTGCACAGGAGTTCTGTAGTGTAGGAGATGATGCTTGCCTCATTCTTTGGGATGCTCGAGTTGGCACTGGCCCTGTTGTCAAGGTTGAAAAAGCTCAC AATGCTGATCTTCACTGTGTTGATTGGAATCCACATGACAACAACTTTATTTTGACTGGATCTGCAGACAATTCTGTTTGCATGTTCGACCGGCGAAATC TCACTAGTAATGATGTTGGCTCACATGTCTACAAATTTGAGGGTCATAGTGCTGCTGTTCTTTGTGTGCAGTGGTGTCCTGATAAGGCATCTGTCTTTGG AAGCTCCGCTGAGGATGGGCTGTTAAACATCTGGGATTATGATGTGATAGGTAAAGAGACGGAAGTGAAAGCCCCAGGGGCTCCGGCAGGATTGTTTTTC CAGCATGCTGGACATAGGGACAAAGTTGTGGACTTCCACTGGAACGCACATGATCCTTGGACCATAGTTAGTGTATCTGATGACTGTGAGACTAGTGGGG GAGGTGGGACATTACAGATATGGAGGATGAGCGATTTGCTGTATAGGCCAGAGAAGGAAGTATTGGAGGAGCTTCAGAACTTCAAAACTCATGTGAGTCA ATGCACAGCAAAGAACTGA
AA sequence Show only first row Show all	>Lus10011936 pacid=23146504 polypeptide=Lus10011936 locus=Lus10011936.g ID=Lus10011936.BGIv1.0 annot-version=v1.0 MEGQVPKKRGRKPKSKDEKDHQQQQQQGKMKEGKRGQHAASVVIGGEASTLLQLTRSTLSGSLSFQFSTTGLLTTTLSGLPSLAGTFYNSFAFLSAPSDF LSFSRVLGVALLLECGLGGFLAFSFRSMRSSPQNTRIVATHTDSPDVLIWDVETQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPFVLSGGKDK SVVLWSIQDHITASASDPASGKSPGSAGSIIKRSEGNDKASDGPTVGPRGIYQGHEDTVEDVAFNPSSAQEFCSVGDDACLILWDARVGTGPVVKVEKAH NADLHCVDWNPHDNNFILTGSADNSVCMFDRRNLTSNDVGSHVYKFEGHSAAVLCVQWCPDKASVFGSSAEDGLLNIWDYDVIGKETEVKAPGAPAGLFF QHAGHRDKVVDFHWNAHDPWTIVSVSDDCETSGGGGTLQIWRMSDLLYRPEKEVLEELQNFKTHVSQCTAKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10011936 [exp]	0	1
AT1G63640			P-loop nucleoside triphosphate...		Lus10032264 [exp]	3.5	0.9516
AT3G62300		ATDUF7	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10002437 [exp]	5.3	0.9368
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10017715 [exp]	6.2	0.9551
AT5G12360			unknown protein		Lus10039048 [exp]	6.3	0.9508
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Lus10024504 [exp]	7.1	0.9243
AT5G25590			Protein of unknown function (D...		Lus10037901 [exp]	7.1	0.9463
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10040282 [exp]	7.2	0.9542
AT3G10310			P-loop nucleoside triphosphate...		Lus10035442 [exp]	7.4	0.9461
AT2G05760			Xanthine/uracil permease famil...		Lus10030014 [exp]	8.0	0.9443
AT4G17000			unknown protein		Lus10035651 [exp]	8.1	0.9534

Compare expression of checked genes

Lus10011936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.