Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19430 394 / 1e-136 DWA1, AtTHO6 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 (.1) AT3G49660 61 / 5e-10 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 54 / 1e-07 TAF5 TBP-associated factor 5 (.1) AT3G16650 53 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 52 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT1G04140 52 / 6e-07 Transducin family protein / WD-40 repeat family protein (.1.2) AT4G15900 51 / 9e-07 PRL1 pleiotropic regulatory locus 1 (.1) AT4G02730 50 / 9e-07 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 50 / 2e-06 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT1G73720 48 / 7e-06 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027630 [exp] 663 / 0 AT2G19430 423 / 3e-148 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 (.1) Lus10024447 [exp] 62 / 5e-10 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10007449 [exp] 60 / 1e-09 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10015340 [exp] 60 / 2e-09 AT2G47990 594 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10003487 [exp] 57 / 6e-09 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 55 / 4e-08 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10017890 [exp] 52 / 5e-07 AT2G47990 584 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10037500 [exp] 50 / 2e-06 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10006511 [exp] 50 / 3e-06 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G001500 [exp] 509 / 0 AT2G19430 454 / 1e-160 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 (.1) Potri.005G148500 [exp] 62 / 2e-10 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 61 / 3e-10 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 60 / 2e-09 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.018G020200 [exp] 59 / 3e-09 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.002G051900 [exp] 55 / 3e-08 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G156900 [exp] 52 / 5e-07 AT1G73720 948 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Potri.010G012800 [exp] 51 / 8e-07 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.001G306500 [exp] 48 / 6e-06 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G052700 [exp] 47 / 1e-05 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10011938 pacid=23146523 polypeptide=Lus10011938 locus=Lus10011938.g ID=Lus10011938.BGIv1.0 annot-version=v1.0 ATGGACGCGACGAACTGGGACGAGGTAGCCTATAGAGATAGCATCCTGCGAGAACGAGCAGCCGAAACCCTAAACGTCTTTAGGACGGCATGGGCGCCTT CTTCAGATTTGATCCCTGATGCCATCGTCGTAGCCTCCAGTGACGGGTCGATCAGTTCGTACTCTATATCCTCATGCGCCTCCAAAGTTCCGCTGGGTTT CGGCTCTGCAATGGCTCCACAGGTTGCGCCTACTGCCTTTGTTCAAGGCCATGACGGACCAGCATATGATGTCAAATTTTATGGCAGCGGCGAAGATGCC TTATTGTTGAGTTGTGGTGATGATGGTCGGATTCGAGGATGGAAATGGAAAGAATTCATCGAATCTGAGGTTCCAATTTCATTGCAAGGAAATCATGTGA ATTCAGTTGTTGACCTTGTGAATCCCCAACAAAGAGGTCCATGGGGTGCTCTTTCGCCAGTCCCTGAAAACAATGCTATTGCTTTAGGCACTAAGGACGC TTCCATCTTTTCTGCTGCTGGTGATTCTTGTGCCTATTGCTGGGATTTGGAGACGTGCAAGATCAAAATGGTTTTCAAGGGGCACTTGGATTATTTGCAC TGTATAGTTGGCCCCAACTCTGCCAATCAGATTATAACTGGGTCAGAAGATGGAACAGCAAGATTTTGGGATTGCAATAGTGGGAAGTGTGTCAGAGTAA TTGACCCAAGGAAGGATAAGAAGTTAAGAAGACCTTCTATGCCTATTAGATGCATTGCACTTGATGCAAGTGACAACTGGTTGGCTTGTAGCAGCGGTCA AAGTTTATCAGTTTGGAACTTGCATGCTTCTGAGTGTGTTTCGAGGACTTCTACCAGTGGTTCCATGCAGGATATAATATTCGACTACAGTCAAGTATTA GCTGTTGGGTCGAAACCTTTTGTCAGTCGATTTGACCTAGATGGAAAGTTTCTATCACAAATACCATGTGCTCCTCAGTCAGCATTCTCCATCTCATTAC ATCCATCGGGGCTGACGGCAATTGGAGGTTATGGTGGTGTTGTAGACGTGATATCCCAGGTTCAAAGTCACTATTGCACATTCCGCTGCAGCCGGGGGTG A
AA sequence Show only first row Show all	>Lus10011938 pacid=23146523 polypeptide=Lus10011938 locus=Lus10011938.g ID=Lus10011938.BGIv1.0 annot-version=v1.0 MDATNWDEVAYRDSILRERAAETLNVFRTAWAPSSDLIPDAIVVASSDGSISSYSISSCASKVPLGFGSAMAPQVAPTAFVQGHDGPAYDVKFYGSGEDA LLLSCGDDGRIRGWKWKEFIESEVPISLQGNHVNSVVDLVNPQQRGPWGALSPVPENNAIALGTKDASIFSAAGDSCAYCWDLETCKIKMVFKGHLDYLH CIVGPNSANQIITGSEDGTARFWDCNSGKCVRVIDPRKDKKLRRPSMPIRCIALDASDNWLACSSGQSLSVWNLHASECVSRTSTSGSMQDIIFDYSQVL AVGSKPFVSRFDLDGKFLSQIPCAPQSAFSISLHPSGLTAIGGYGGVVDVISQVQSHYCTFRCSRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10011938 [exp]	0	1
AT1G29370			Kinase-related protein of unkn...		Lus10004604 [exp]	3.2	0.8881
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10037223 [exp]	4.9	0.8665
AT2G42490			Copper amine oxidase family pr...		Lus10004618 [exp]	5.5	0.8488
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Lus10001639 [exp]	6.0	0.8471
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Lus10020230 [exp]	6.7	0.8574
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10034282 [exp]	7.1	0.8543
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039424 [exp]	7.5	0.8500
AT4G14180		ATPRD1	putative recombination initiat...		Lus10022584 [exp]	8.1	0.7941
AT1G64550		SCORD5, AtGCN20...	susceptible to coronatine-defi...		Lus10032431 [exp]	12.4	0.8491
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001440 [exp]	13.4	0.8558

Compare expression of checked genes

Lus10011938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.