Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19460 104 / 7e-30 Protein of unknown function (DUF3511) (.1) AT5G11970 96 / 2e-26 Protein of unknown function (DUF3511) (.1) AT3G13910 72 / 2e-17 Protein of unknown function (DUF3511) (.1) AT3G62640 62 / 2e-13 Protein of unknown function (DUF3511) (.1) AT1G72720 61 / 7e-13 Protein of unknown function (DUF3511) (.1) AT3G05725 59 / 3e-12 Protein of unknown function (DUF3511) (.1) AT2G47480 57 / 1e-11 Protein of unknown function (DUF3511) (.1) AT4G09890 52 / 7e-10 Protein of unknown function (DUF3511) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027629 [exp] 237 / 4e-82 AT2G19460 110 / 2e-32 Protein of unknown function (DUF3511) (.1) Lus10017155 [exp] 142 / 6e-45 AT5G11970 93 / 1e-25 Protein of unknown function (DUF3511) (.1) Lus10021581 [exp] 130 / 8e-40 AT5G11970 97 / 4e-27 Protein of unknown function (DUF3511) (.1) Lus10008471 [exp] 94 / 1e-25 AT2G19460 95 / 1e-26 Protein of unknown function (DUF3511) (.1) Lus10006019 [exp] 89 / 1e-23 AT2G19460 88 / 9e-24 Protein of unknown function (DUF3511) (.1) Lus10028690 [exp] 61 / 6e-13 AT4G09890 71 / 1e-17 Protein of unknown function (DUF3511) (.1) Lus10010929 [exp] 58 / 7e-12 AT3G05725 71 / 3e-17 Protein of unknown function (DUF3511) (.1) Lus10028734 [exp] 57 / 7e-12 AT4G09890 69 / 8e-17 Protein of unknown function (DUF3511) (.1) Lus10031405 [exp] 57 / 2e-11 AT3G05725 71 / 6e-17 Protein of unknown function (DUF3511) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G147700 [exp] 147 / 1e-46 AT2G19460 96 / 2e-26 Protein of unknown function (DUF3511) (.1) Potri.003G043600 [exp] 109 / 6e-32 AT5G11970 89 / 5e-24 Protein of unknown function (DUF3511) (.1) Potri.001G197700 [exp] 104 / 5e-30 AT2G19460 78 / 1e-19 Protein of unknown function (DUF3511) (.1) Potri.006G225900 [exp] 93 / 2e-25 AT5G11970 90 / 2e-24 Protein of unknown function (DUF3511) (.1) Potri.014G123600 [exp] 62 / 3e-13 AT2G47480 93 / 5e-26 Protein of unknown function (DUF3511) (.1) Potri.005G195800 [exp] 59 / 1e-12 AT4G09890 81 / 1e-21 Protein of unknown function (DUF3511) (.1) Potri.002G065200 [exp] 59 / 1e-12 AT4G09890 84 / 9e-23 Protein of unknown function (DUF3511) (.1) Potri.005G019900 [exp] 55 / 6e-11 AT3G05725 63 / 3e-14 Protein of unknown function (DUF3511) (.1) Potri.007G077500 [exp] 53 / 4e-10 AT4G09890 80 / 3e-21 Protein of unknown function (DUF3511) (.1) Potri.010G140800 [exp] 52 / 5e-10 AT2G47480 62 / 2e-14 Protein of unknown function (DUF3511) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12023 [flax] [poplar] DUF3511 Domain of unknown function (DUF3511)
Representative CDS sequence Show only first row Show all	>Lus10011939 pacid=23146506 polypeptide=Lus10011939 locus=Lus10011939.g ID=Lus10011939.BGIv1.0 annot-version=v1.0 ATGGAAGACTACCGATCCAAGTCTTACGCCGATGGTCGATCCTCACAACCAGACCTCTACCACTACGGCCCACCTCCAACCAGCAGCGAAGGAGGAGGCG GAGGCGGTATGCAGGATCTCAGGTGCTACAGCGCTTCCTACTCCTCCGTCTACCCTTCTCAGACCGCCAATCACCAATTGGACTTGTACAATCCCAAGTT CAAGAAGGGTAAGTCCACAAACGGCTCCGTTTCAAAGTCGTGGAGCTTCAACGATCCTGAATTGCAGCGCAAGAAGCGGGTTGCTAGCTACAAGGTTTAC ACCGTTGAAGGAAAAGTTAAAGGATCTTTCAGAAAGAGCTTCAGGTGGCTCAAGGATCGCTACTCCAGAGTCGCAAACGGCTGGTGGTGA
AA sequence Show only first row Show all	>Lus10011939 pacid=23146506 polypeptide=Lus10011939 locus=Lus10011939.g ID=Lus10011939.BGIv1.0 annot-version=v1.0 MEDYRSKSYADGRSSQPDLYHYGPPPTSSEGGGGGGMQDLRCYSASYSSVYPSQTANHQLDLYNPKFKKGKSTNGSVSKSWSFNDPELQRKKRVASYKVY TVEGKVKGSFRKSFRWLKDRYSRVANGWW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19460			Protein of unknown function (D...		Lus10011939 [exp]	0	1
					Lus10008052 [exp]	2.8	0.8987
AT4G25030			unknown protein		Lus10041414 [exp]	4.9	0.8918
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10005992 [exp]	7.7	0.8746
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Lus10026246 [exp]	8.0	0.8326
AT1G52080		AR791	actin binding protein family (...		Lus10025846 [exp]	8.7	0.8819
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10035874 [exp]	8.7	0.8426
AT1G61065			Protein of unknown function (D...		Lus10018474 [exp]	9.6	0.8386
AT1G30090			Galactose oxidase/kelch repeat...		Lus10028121 [exp]	13.9	0.8706
AT2G19460			Protein of unknown function (D...		Lus10027629 [exp]	14.2	0.8917
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10036484 [exp]	15.2	0.8322

Compare expression of checked genes

Lus10011939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.