Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26100 654 / 0 CKL1, CK1 casein kinase 1 (.1) AT1G72710 638 / 0 CKL2 casein kinase 1-like protein 2 (.1) AT5G57015 636 / 0 CKL12 casein kinase I-like 12 (.1) AT2G19470 566 / 0 CKL5 casein kinase I-like 5 (.1) AT1G03930 519 / 0 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT5G44100 516 / 0 CKL7 casein kinase I-like 7 (.1) AT3G23340 516 / 0 CKL10 casein kinase I-like 10 (.1) AT4G14340 499 / 5e-175 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1) AT4G28540 498 / 3e-174 CKL6, PAPK1 casein kinase I-like 6 (.1) AT1G04440 494 / 1e-172 CKL13 casein kinase like 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027628 [exp] 900 / 0 AT4G26100 702 / 0.0 casein kinase 1 (.1) Lus10006879 [exp] 630 / 0 AT1G72710 664 / 0.0 casein kinase 1-like protein 2 (.1) Lus10006018 [exp] 627 / 0 AT1G72710 649 / 0.0 casein kinase 1-like protein 2 (.1) Lus10037621 [exp] 627 / 0 AT1G72710 655 / 0.0 casein kinase 1-like protein 2 (.1) Lus10033913 [exp] 526 / 0 AT4G28540 663 / 0.0 casein kinase I-like 6 (.1) Lus10022029 [exp] 522 / 0 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10021175 [exp] 521 / 0 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10042570 [exp] 518 / 0 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10014661 [exp] 512 / 1e-179 AT3G23340 637 / 0.0 casein kinase I-like 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G065900 [exp] 779 / 0 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 768 / 0 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 682 / 0 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.003G043500 [exp] 668 / 0 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.008G168100 [exp] 519 / 0 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1) Potri.010G070400 [exp] 519 / 0 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1) Potri.002G036000 [exp] 518 / 0 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.005G226900 [exp] 518 / 0 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.013G047200 [exp] 505 / 4e-177 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.018G041000 [exp] 484 / 2e-169 AT4G28880 589 / 0.0 casein kinase I-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10011940 pacid=23146533 polypeptide=Lus10011940 locus=Lus10011940.g ID=Lus10011940.BGIv1.0 annot-version=v1.0 ATGGAACCTCGTGTTGGCAATAAGTTTCGGCTTGGTCGTAAGATCGGCAGCGGTTCATTTGGGGAGATCTATCTTGGTACCAATATTCAGACCAATGAAG AGGTTGCTATTAAACTTGTGAGTCCTGACTTTGACTCGAAAGATTCTAAATTCAAAGAGTATTTCTCTTGGGAAAATGTGAAGACAAAGCATCCACAGTT GTTGTATGAATCCAAGTTATACAGAATCTTGCAGGGAGGAACTGGTATTCCAAATGTGAGGTGGTTTGGTGTTGAAGGAGACTACAATGTTCTGGTGATG GATTTGCTTGGACCTAGTCTTGAAGATCTATTTAATTTCTGCAGTAGGAAACTCTCTTTGAAGTCTGTTCTTATGCTTGCAGATCAAATGATCAATCGAG TTGAGTTTTTTCACTCAAAGTCATTCTTACATCGGGATATCAAGCCAGACAATTTTCTTATGGGTCTTGGGAGACGCGCAAACCAGGTATATATCATTGA CTTTGGTTTGGCAAAGAAATATCGAGATAGCTCAACTCATCAGCACATTCCATACAGGGAGAACAAAAACTTGACTGGTACTGCTAGATATGCAAGCATG AATACTCATCTTGGAATTGAGCAAAGCAGAAGGGACGATCTGGAGTCTCTTGGTTATGTTCTTATGTACTTCCTAAGGGGAAGCCTTCCTTGGCAGGGTC TGAAAGCTGGCACAAAGAAACAGAAGTATGATAAAATCAGTGAAAAGAAAGCCTTATGTCGGGGTTATCCAAGTGAATTTGCTTCTTACTTCCATTACTG TCGTTCATTACGGTTTGATGATAAGCCTGATTATGGATACCTGAAAAGAATATTCCGTGATCTCTTCATTCGAGAAGGCTTCCAGTTTGATTATGTCTTT GACTGGACAATACTGAAGTATCAGCAATCACAGCTGGCTAATCCTCCAGCACGTGGACTTGCCCCTGGTGTTGGAACTAGTTCTGGTATGCCTCCTATGG CTAGTGTAGATAGACAGACAGCTGAAGAAGCACGACCCTTTATTCAGTCAATGGATCCCTCACGCCGAAGATTCTCTGGACCAATATTAAATACAGGAAG TCATGCTAAGCAGAAGAGTCCGATTAATAATGATTCCCCTAGTGCAATCGACCCAATTTTACCAAGCTCCAATTTCTTGGGTAGATCGAGTGGATCGTCG CGACGTGCTGCAGCTGTTTCCAGCAGCCGTGATGTGTTTGGTGGAAGCGAGATTGATCCCCAACGCTCTCGTCAAACAGATTCAGCAAACACTGGAAGCA TACCAAACCTTTTGGGTGGTGAAAGAAGCCCCACTTTTGGTTCGTCGGAGCCTAGACGCACTGCATCTGCTAGAAATACTGCGCACGTGAAGACATTTGA ATCTGCCCTCAAAGGAATCGAGGGTCTGAATTTTGACAGTAATGAGAAGGCTCAGTACTAG
AA sequence Show only first row Show all	>Lus10011940 pacid=23146533 polypeptide=Lus10011940 locus=Lus10011940.g ID=Lus10011940.BGIv1.0 annot-version=v1.0 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLVSPDFDSKDSKFKEYFSWENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVM DLLGPSLEDLFNFCSRKLSLKSVLMLADQMINRVEFFHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASM NTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKALCRGYPSEFASYFHYCRSLRFDDKPDYGYLKRIFRDLFIREGFQFDYVF DWTILKYQQSQLANPPARGLAPGVGTSSGMPPMASVDRQTAEEARPFIQSMDPSRRRFSGPILNTGSHAKQKSPINNDSPSAIDPILPSSNFLGRSSGSS RRAAAVSSSRDVFGGSEIDPQRSRQTDSANTGSIPNLLGGERSPTFGSSEPRRTASARNTAHVKTFESALKGIEGLNFDSNEKAQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10011940 [exp]	0	1
AT5G19420			Regulator of chromosome conden...		Lus10036030 [exp]	1.4	0.8751
AT1G01710			Acyl-CoA thioesterase family p...		Lus10037853 [exp]	2.4	0.8542
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Lus10017736 [exp]	4.0	0.8337
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10006651 [exp]	6.0	0.8634
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Lus10016576 [exp]	7.1	0.8274
AT3G10350			P-loop containing nucleoside t...		Lus10038715 [exp]	7.3	0.8393
AT3G07890			Ypt/Rab-GAP domain of gyp1p su...		Lus10006410 [exp]	7.3	0.8333
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10011581 [exp]	8.8	0.8390
AT5G61220			LYR family of Fe/S cluster bio...		Lus10034706 [exp]	10.4	0.7591
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	11.4	0.8448

Compare expression of checked genes

Lus10011940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.