Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26150 221 / 5e-68 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G22830 209 / 9e-63 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT5G54070 196 / 9e-59 HSF AT-HSFA9 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A9, heat shock transcription factor A9 (.1) AT1G32330 189 / 2e-54 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G17750 188 / 4e-54 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT5G16820 187 / 6e-54 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G51910 178 / 1e-52 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT3G63350 175 / 3e-51 HSF AT-HSFA7B HEAT SHOCK TRANSCRIPTION FACTOR A7B, winged-helix DNA-binding transcription factor family protein (.1) AT3G02990 179 / 5e-51 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT5G43840 163 / 7e-47 HSF AT-HSFA6A heat shock transcription factor A6A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027627 [exp] 652 / 0 AT2G26150 229 / 4e-71 heat shock transcription factor A2 (.1.2) Lus10013797 [exp] 217 / 2e-66 AT2G26150 314 / 5e-106 heat shock transcription factor A2 (.1.2) Lus10006618 [exp] 214 / 4e-65 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10039376 [exp] 207 / 1e-62 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000492 [exp] 206 / 6e-62 AT3G22830 365 / 1e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10014698 [exp] 204 / 2e-61 AT3G22830 363 / 4e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10039134 [exp] 196 / 3e-58 AT2G26150 292 / 7e-97 heat shock transcription factor A2 (.1.2) Lus10000312 [exp] 195 / 8e-57 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10022083 [exp] 191 / 2e-56 AT3G22830 314 / 1e-104 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G148200 [exp] 340 / 4e-112 AT2G26150 256 / 4e-81 heat shock transcription factor A2 (.1.2) Potri.006G226800 [exp] 219 / 9e-67 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.005G214800 [exp] 206 / 3e-62 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.002G048200 [exp] 206 / 5e-62 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 204 / 7e-62 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.010G082000 [exp] 200 / 4e-60 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.001G138900 [exp] 198 / 8e-58 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 193 / 8e-56 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.006G115700 [exp] 178 / 3e-50 AT5G03720 308 / 5e-100 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) Potri.013G079800 [exp] 177 / 7e-50 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10011941 pacid=23146539 polypeptide=Lus10011941 locus=Lus10011941.g ID=Lus10011941.BGIv1.0 annot-version=v1.0 ATGAACACGGTGGCTTCAGAAGTTCCCGCCGCCGACCTCAAATGCGGAATCGCCTGTGTTGCAGACGACGAAGAGGAATTAACTACGACTACGAGTCTGG GCGAAGCAGAGGAAGAAGAGAGGAATCCTCCTCCTCTATTTTTTAACGGCGAGTCTGAGGCTGCTTCCTCTTCGATGGAGAAAGCGGAGGAGGATTCAGT GATGATCAAAACAGTCTTGATTAAGCAAGAGGTGGAGGAGGAGGATTGCGACGGAGTGGTGAAATACTATTTGAAAAGTGAAGGAAGGAACTGTAATGGT TCTTCTTCTTCGTCTTCGTCTTCTGGTTTTCCCAAACCTATGGAGGGATTACAGGACTCTGCTCCACCGCCTTTCCTGAAGAAGACCTTCGAGATGGTGG AGGATTTGGAGACGGATCCCATCGTTTCCTGGAGCAAGAATCGTGACAGTTTTGTTGTTTGGGATTCTCATGAGTTTTCTAAGTTCCTTTTACCCAAGTA TTTCAAACACAGCAATTTCTCCAGCTTCATTCGTCAGCTCAACACCTATGGATTTAGGAAGATTGATCCGGACAGATGGGAGTTTGCTAATGAAGGATTC CAAGGGGGCAAGAAGCATTTGCTCAAGAACATCAAGAGGAGGAGTCGATACAACAACAACAACAACAAATGCCATAATCATGATCATCATTATCATAAGC AGAAGCAGCAGCTGTCCATCCGCGTCGGCTCCGATTTAACGAAACCTTCGCTTGAAACCGAGCTGGATAGCTTGAGGAACGATCACGACTTGCTGAAATT GGAAATCCTGAAACTGAGGCAGACGCATCAAGATTCGGAAAACCAATTGGTTGCAGTGGAGGAGCGTGTTTGTGCAGCAGAGTGCAAACAAATCCAGATG TTTATGTTCTTCGCCAAAGCAACCAAAAACCCTGCCTTCATCCAACGTCTCTCCCAGAGAAGGAAATTGGATTGCCGCGGCGAAATGGTGAAGAAGAGGA GAATGCTGCCAACTGCCGAGATTAATCCTGCTCCTGTTCATCATCCCGTTGATAATAACAACATCATCATCAACTGCAGGAACCAGGCACGCCGCCATCT GGCGGCGATGCAATCCGAACTAGATCAGGTATTATCGGAGAGTGATACCACTGCTACTTGTTCCGTATCCGAGAATGGGAGTGATGATAATCCTGAAGAT ATGGTCTCAGTTTATGATCTTATGTCGGAAGATCTTCTGGTTGATGAGGATTTGGATATGAATGAATCCAAATTGTTTTCGGAATTGGAGAATCTGCTGG GTACTAGCAGCAGCAGGCCACACAGTACTTGGAGTGGATGTGTAACTGGCTTGGTAGGGAATGCTGGTTGCGCTTAG
AA sequence Show only first row Show all	>Lus10011941 pacid=23146539 polypeptide=Lus10011941 locus=Lus10011941.g ID=Lus10011941.BGIv1.0 annot-version=v1.0 MNTVASEVPAADLKCGIACVADDEEELTTTTSLGEAEEEERNPPPLFFNGESEAASSSMEKAEEDSVMIKTVLIKQEVEEEDCDGVVKYYLKSEGRNCNG SSSSSSSSGFPKPMEGLQDSAPPPFLKKTFEMVEDLETDPIVSWSKNRDSFVVWDSHEFSKFLLPKYFKHSNFSSFIRQLNTYGFRKIDPDRWEFANEGF QGGKKHLLKNIKRRSRYNNNNNKCHNHDHHYHKQKQQLSIRVGSDLTKPSLETELDSLRNDHDLLKLEILKLRQTHQDSENQLVAVEERVCAAECKQIQM FMFFAKATKNPAFIQRLSQRRKLDCRGEMVKKRRMLPTAEINPAPVHHPVDNNNIIINCRNQARRHLAAMQSELDQVLSESDTTATCSVSENGSDDNPED MVSVYDLMSEDLLVDEDLDMNESKLFSELENLLGTSSSRPHSTWSGCVTGLVGNAGCA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10011941 [exp]	0	1
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10004751 [exp]	5.1	0.8785
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10007840 [exp]	7.1	0.8743
AT5G51110			Transcriptional coactivator/pt...		Lus10014182 [exp]	8.7	0.8763
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10004151 [exp]	10.6	0.8592
AT5G62165	MADS	FYF, AGL42	FOREVER YOUNG FLOWER, AGAMOUS-...		Lus10031665 [exp]	15.3	0.8253
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10008570 [exp]	17.2	0.8407
AT5G48910		LPA66	LOW PSII ACCUMULATION 66, Pent...		Lus10010908 [exp]	17.3	0.8422
AT4G11175			Nucleic acid-binding, OB-fold-...		Lus10037352 [exp]	20.2	0.8446
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10042081 [exp]	23.2	0.8407
AT5G58330			lactate/malate dehydrogenase f...		Lus10037935 [exp]	26.3	0.8517

Compare expression of checked genes

Lus10011941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.