Lus10011942 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G19385 168 / 2e-50 zinc ion binding (.1)
AT2G19380 110 / 7e-27 RNA recognition motif (RRM)-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027626 473 / 8e-170 AT2G19385 250 / 1e-82 zinc ion binding (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G146200 243 / 4e-79 AT2G19385 272 / 7e-91 zinc ion binding (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0361 C2H2-zf PF08790 zf-LYAR LYAR-type C2HC zinc finger
Representative CDS sequence
>Lus10011942 pacid=23146508 polypeptide=Lus10011942 locus=Lus10011942.g ID=Lus10011942.BGIv1.0 annot-version=v1.0
ATGGTGTGGTTTCAGTGTGATGACTGCGGGGAGGAAGTGAAGAAACCCAAGCTTTCTAACCACTACCGTATTTGCTCCGCTTCTAAGCTGTCTTGCATTG
ATTGTGGGGTGACATTCGGCCCAGACAGCGTCCAGGGCCATACTCAATGCATTACAGAAGCTGAAAAGTATGGTCCTAAAGGAGTGGCGAGGCCATCTGT
AAATGGAATAATCCCTAAATCCAAGGATTCAAAGCCAAAACCTGATGTTGATATTAATGTTGGCTTGTCTCTACGCCCACCATGGACTTGCAGTCTTTGT
AATAGCAAGGCTACTAGTAAGCAGGCTCTACTTTTGCATGCTGATGGAAAGAAGCATCGGGCAAAGGCCAGGGCTTTTCATGCTGGTAAGCAACCTAAAC
AGATAGAAGAAAATGTACAAGAGGCAGTAGTCCCGTTAGATGGCAGTGGAATTGTTTCTAAAGGCTTACAGGATGAAAAGGCACAAGATAGAGCTACATC
TGACAGTTTAAAACTAGAGGATGGACTGTTGCCATCAGAGAAGAAGCGAAAACTAGATGTATCAGATAGTGATGGTAATGTGAAAAAGGTTAAGGGTGAT
GCAGTTCAGGTTGGAAGTGTTGAAATGGATGAAACTAATGCTAAATTGAAGAAAGTCAAACCAAATGGGACCAAGAATGAAAAGGAGTTACAAGTGCAGA
CCGAGAAGAAGATCAAGTGGAAGAAGTTGATTAAGGCAGCCCTGAAATCTAATCCAGATGGAGGGATGAAATTGAGGAAACTGAAAAACCAAGTCCAGAA
ATTGCTGCAGGAATCTGGGCAAGTCGTTGATGAAGATGAATTGGGCAATATTCTCGAGCAAAAGGTTGGTTCGAACTCCAGATTCACACTTGATGGCAAG
TACGTCGGCTAG
AA sequence
>Lus10011942 pacid=23146508 polypeptide=Lus10011942 locus=Lus10011942.g ID=Lus10011942.BGIv1.0 annot-version=v1.0
MVWFQCDDCGEEVKKPKLSNHYRICSASKLSCIDCGVTFGPDSVQGHTQCITEAEKYGPKGVARPSVNGIIPKSKDSKPKPDVDINVGLSLRPPWTCSLC
NSKATSKQALLLHADGKKHRAKARAFHAGKQPKQIEENVQEAVVPLDGSGIVSKGLQDEKAQDRATSDSLKLEDGLLPSEKKRKLDVSDSDGNVKKVKGD
AVQVGSVEMDETNAKLKKVKPNGTKNEKELQVQTEKKIKWKKLIKAALKSNPDGGMKLRKLKNQVQKLLQESGQVVDEDELGNILEQKVGSNSRFTLDGK
YVG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G19385 zinc ion binding (.1) Lus10011942 0 1
AT2G34570 MEE21 maternal effect embryo arrest ... Lus10001157 6.0 0.9051
AT3G56070 ROC2 rotamase cyclophilin 2 (.1.2) Lus10022012 13.9 0.8851
AT4G21705 Tetratricopeptide repeat (TPR)... Lus10003590 15.0 0.8770
AT3G51800 ATEBP1, ATG2, E... A. THALIANA ERBB-3 BINDING PRO... Lus10002851 15.5 0.8917
AT2G20450 Ribosomal protein L14 (.1) Lus10011807 22.2 0.8904
AT5G60990 DEA(D/H)-box RNA helicase fami... Lus10031761 23.5 0.8900
AT1G18800 NRP2 NAP1-related protein 2 (.1) Lus10008620 24.2 0.8720
AT5G62290 nucleotide-sensitive chloride ... Lus10027193 25.1 0.8846
AT4G13850 ATGRP2, GR-RBP2 glycine rich protein 2, glycin... Lus10022551 25.1 0.8862
AT2G44120 Ribosomal protein L30/L7 famil... Lus10004220 29.3 0.8896

Lus10011942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.