Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26060 134 / 2e-40 Ribosomal protein L18ae family (.1) AT5G57060 129 / 1e-38 unknown protein AT1G54217 89 / 4e-23 Ribosomal protein L18ae family (.1.2.3) AT3G14595 39 / 0.0004 Ribosomal protein L18ae family (.1) AT1G53560 39 / 0.0006 Ribosomal protein L18ae family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027625 [exp] 270 / 9e-94 AT4G26060 147 / 2e-46 Ribosomal protein L18ae family (.1) Lus10026180 [exp] 42 / 9e-05 AT1G29970 63 / 7e-12 60S ribosomal protein L18A-1 (.1.2.3) Lus10042485 [exp] 40 / 0.0001 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G146300 [exp] 172 / 2e-55 AT4G26060 152 / 2e-48 Ribosomal protein L18ae family (.1) Potri.018G050900 [exp] 167 / 2e-53 AT4G26060 151 / 4e-48 Ribosomal protein L18ae family (.1) Potri.001G198700 [exp] 102 / 2e-28 AT4G26060 107 / 3e-31 Ribosomal protein L18ae family (.1) Potri.003G044400 [exp] 99 / 2e-27 AT5G57060 103 / 3e-30 unknown protein Potri.001G380200 [exp] 40 / 0.0002 AT1G17080 127 / 3e-38 Ribosomal protein L18ae family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011943 pacid=23146525 polypeptide=Lus10011943 locus=Lus10011943.g ID=Lus10011943.BGIv1.0 annot-version=v1.0 ATGCTGGCTGAAAGAATCTCAACCGAACCACTTATGGATAGAAGTAAAGAACCTCTCTTTCTCCGCTTTATTTCTTCGTTTATTTTTGTTACCACCCTTA TCTATGTTTCTCCAAGGGAAGGTCTTGACGAGCAACATGCTAGCTTTGAGGAGGCCAAAAGCTTAAGGAATGGAGCTGAGTTGGTAAAATCAGCCAATGA TAAACCTATTGATCGTCTTAGACCAGCTGCTAGGCACAATTCAGTATTCAGAGGGCAACCTATAGCAACAGAGTCATCAGGGCACGAAAAGGGGAAGTAC ACCCTGATAAGAGATCCCGAGGATTTCGTAGCAGGAAGTGCATTTGATAAGCCCCTTCCTTGCTTTGGCTGTGGAATAGGGTGGTTTTCCTTTCTTTCTG GGTTCTTGTTCCCACTAATGTGGTACTATGCCACAATCCTATATTTTGGAAACTACTATCGTAAAGATCCGAGGGAAAGAGCAGGCCTTGCTGCAGCAGC AATTGCAGCAATGGGTTGCTCTGTTGTGATGGTGTTCATTCTTGCTTACTGTTTTCTGTTTTGA
AA sequence Show only first row Show all	>Lus10011943 pacid=23146525 polypeptide=Lus10011943 locus=Lus10011943.g ID=Lus10011943.BGIv1.0 annot-version=v1.0 MLAERISTEPLMDRSKEPLFLRFISSFIFVTTLIYVSPREGLDEQHASFEEAKSLRNGAELVKSANDKPIDRLRPAARHNSVFRGQPIATESSGHEKGKY TLIRDPEDFVAGSAFDKPLPCFGCGIGWFSFLSGFLFPLMWYYATILYFGNYYRKDPRERAGLAAAAIAAMGCSVVMVFILAYCFLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26060			Ribosomal protein L18ae family...		Lus10011943 [exp]	0	1
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	3.2	0.9512
AT4G29890			choline monooxygenase, putativ...		Lus10032689 [exp]	3.7	0.9461
AT4G29890			choline monooxygenase, putativ...		Lus10008571 [exp]	5.5	0.9423
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10011657 [exp]	7.1	0.9272
AT4G32160			Phox (PX) domain-containing pr...		Lus10001496 [exp]	7.4	0.9350
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Lus10000408 [exp]	8.5	0.9247
AT5G49710			unknown protein		Lus10015965 [exp]	9.9	0.9443
AT2G39920			HAD superfamily, subfamily III...		Lus10028259 [exp]	10.0	0.9432
AT1G44770			unknown protein		Lus10034500 [exp]	12.5	0.9433
AT3G26935			DHHC-type zinc finger family p...		Lus10016754 [exp]	12.7	0.9357

Compare expression of checked genes

Lus10011943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.