Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29820 201 / 3e-65 CFIM-25, ATCFIM-25 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1) AT4G25550 133 / 6e-39 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027624 [exp] 314 / 5e-110 AT4G29820 228 / 3e-76 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1) Lus10014987 [exp] 137 / 1e-40 AT4G25550 383 / 8e-138 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) Lus10038867 [exp] 99 / 4e-25 AT4G25550 245 / 1e-82 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G146400 [exp] 209 / 2e-68 AT4G29820 292 / 2e-101 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1) Potri.015G143300 [exp] 139 / 4e-41 AT4G25550 385 / 9e-139 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) Potri.012G140301 [exp] 81 / 1e-19 AT4G25550 208 / 5e-70 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011944 pacid=23146532 polypeptide=Lus10011944 locus=Lus10011944.g ID=Lus10011944.BGIv1.0 annot-version=v1.0 ATGGGAAGAGAAGATCCCATAACCAGTAGTGGTGCGGGTGATCTCAAAACTGGCGTTGAAGATGAAGAGATCATGAGGAATAGTAATAGTGTGAGTGTGA GTAGTGTGGTGGTGGAGATATATCCTCTGAGCAGCTACTACTTCGGCTCCAAGGAATCTCTTCCTTCCAAGCATCACTGCACTACTCTTGCTCTAAGGAT CAACTCCAAGTACTACAGTTACAGGGGATTGAGGACTTGCGTCGAAGCTGTCATGCTGGGTACTCGTCTGTCGTGTCAGGTGGAGCTGTTCAAACACCCG CATGTGTTGATATTGCAAGAGAGGAACTCCTCCTTCAGCCTCCCTGGGGGACGGCTTAGACCTGCTGAAACTGATGTTGATGGTTTGAAGCGTAAGCTAT CAACCAAGCTCTCACTCGAACTGGATGATCATCATCACGAAACTAATTGGGAATGCCTTGGCATGTGGTGGAAAACAGACATTGAATGCACAAAGCTGTA CCTTGTGAGGTTGCAGGGAAGTCTGAGCTTCATCGTCCCTAAAAATCTCAAGTTGCTTGCCGTGCCGCTGTGCCAGCTGCATCAAAATCACAAGACGTAC GGAGAGATAATAGCACGAGTGCCAAAGATGCTATCTAAAGTCTCCTTCAACACTGTTCATTAA
AA sequence Show only first row Show all	>Lus10011944 pacid=23146532 polypeptide=Lus10011944 locus=Lus10011944.g ID=Lus10011944.BGIv1.0 annot-version=v1.0 MGREDPITSSGAGDLKTGVEDEEIMRNSNSVSVSSVVVEIYPLSSYYFGSKESLPSKHHCTTLALRINSKYYSYRGLRTCVEAVMLGTRLSCQVELFKHP HVLILQERNSSFSLPGGRLRPAETDVDGLKRKLSTKLSLELDDHHHETNWECLGMWWKTDIECTKLYLVRLQGSLSFIVPKNLKLLAVPLCQLHQNHKTY GEIIARVPKMLSKVSFNTVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10011944 [exp]	0	1
					Lus10011962 [exp]	4.4	0.9943
					Lus10006919 [exp]	4.5	0.9934
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10012601 [exp]	6.2	0.9943
AT5G01780			2-oxoglutarate-dependent dioxy...		Lus10009087 [exp]	7.2	0.9555
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004042 [exp]	7.5	0.9943
					Lus10022805 [exp]	8.7	0.9943
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	9.7	0.9943
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	10.7	0.9943
AT5G04350			Plant self-incompatibility pro...		Lus10029388 [exp]	11.5	0.9943
					Lus10030558 [exp]	12.3	0.9943

Compare expression of checked genes

Lus10011944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.