Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29810 406 / 6e-140 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT4G26070 369 / 2e-125 NMAPKK, MKK1, ATMEK1, MEK1 MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, MAP kinase/ ERK kinase 1 (.1.2.3) AT5G56580 352 / 1e-118 ANQ1, ATMKK6 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) AT5G40440 245 / 4e-75 ATMKK3 mitogen-activated protein kinase kinase 3 (.1) AT1G51660 187 / 6e-55 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT3G21220 182 / 3e-53 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT1G73500 173 / 4e-50 ATMKK9 MAP kinase kinase 9 (.1) AT1G18350 167 / 6e-48 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) AT3G15220 146 / 1e-37 Protein kinase superfamily protein (.1) AT3G06230 138 / 4e-37 ATMKK8 MAP kinase kinase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027623 [exp] 529 / 0 AT4G29810 520 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10012938 [exp] 350 / 8e-118 AT5G56580 621 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10034986 [exp] 341 / 4e-114 AT5G56580 605 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10022265 [exp] 244 / 8e-75 AT5G40440 861 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Lus10001137 [exp] 239 / 7e-74 AT5G40440 711 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Lus10001081 [exp] 171 / 3e-50 AT1G73500 296 / 2e-101 MAP kinase kinase 9 (.1) Lus10035764 [exp] 172 / 2e-49 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10036915 [exp] 141 / 1e-35 AT1G69220 917 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037070 [exp] 141 / 1e-35 AT1G69220 909 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G050800 [exp] 468 / 3e-164 AT4G29810 540 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.006G146500 [exp] 446 / 2e-155 AT4G29810 495 / 7e-177 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.018G068500 [exp] 375 / 1e-127 AT5G56580 588 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Potri.001G345500 [exp] 239 / 6e-73 AT5G40440 851 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Potri.015G030700 [exp] 188 / 2e-55 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.010G249300 [exp] 180 / 4e-52 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.012G043200 [exp] 177 / 1e-51 AT1G73500 381 / 2e-133 MAP kinase kinase 9 (.1) Potri.008G009800 [exp] 175 / 2e-50 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.010G049500 [exp] 156 / 1e-43 AT1G18350 288 / 1e-96 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.008G183700 [exp] 154 / 6e-43 AT1G18350 289 / 5e-97 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10011945 pacid=23146509 polypeptide=Lus10011945 locus=Lus10011945.g ID=Lus10011945.BGIv1.0 annot-version=v1.0 ATGAACAAGAGGAGTTTGAACCCCAACCTCAACCTTAAGCTCTCTCTTCCTCCTCCCGATGAAATTTCCTTCGCCAAGTTCCTAACCCAGAGTGGGACAT TTATGGATGGTGATCTGCTCGTCAATCGCGATGGCGTTCGCATTGTCACTCAAACTGAACCTGATGCTCCACCTCCGATTCAGCCTGCCGACAATCAGAT GAGTCTAGAAGATATAGACACTGTGAAGGTCATCGGCAAGGGAAATGGAGGCATTGTTCAGCTGGTGCAGCACAAGTGGACCGGCCAGTTTTTCGCATTG AAGTTAGGCATCATTAGACGAAAGAGTGGTCTTTCAGGATTGGTCGTTGTGTGTCACCACCACCACCTATCCTACACATTCGATCAAGGTTGTCACTGCT ATGCTATAGTTAAGGTGCACGGGGTCTTTCCTTCTAGCCTTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCACGTCGGAGACAGCGG GGCATTCGTTACACCATTCATGCGGGTCGCTACTCATGCGACAAGGAATTTTGCTACCTTAGGACAGTTAACAGTTACTGCCGCCGTTAAGCGGGGCTTC CATTCAGAGCTTATAACACTTCTCCGTCCGACCTGTAGACCTGTGATCAACTCAAGTATTCCTCTGCCTGTCATCCAAATGAATATCCAGGAGTCTGCTC GTAGGGCAATTGCCCAGGAACTGAAAATTAATCAATCGGCACAATGTCCCAATGTTGTTATGTGCTATCAATCTTTCTATGACAACGGTGCTGTTTCCAT CATCTTAGAGTACATGGATGGTGGTTCCCTGGCAGATTTTCTGAGAAAAGTTAGAACAATTCCAGAACCATACCTTGCAGCTATCTGTAAGCAGGTATTA AAAGGTTTGTTGTATCTTCATCATGAGAAACATGTTATCCACAGAGACATGAAGCCTTCCAATTTGTTGATAAATCATAGAGGAGAGGTCAAAATCACTG ACTTTGGTGTGAGTGCAATAATGCAAAACACCTCAGGCCAGGCAAATACGTTTGTTGGCACATACAACTATATGTCCCCGGAGAGAATTAGTGGAGAACA ATATGGCTATAAAAGTGATATTTGGAGCTTGGGGTTAGTGTTGATGGAATGCGCAACAGGCCATTTTCCATATTCTCCTCCAGAGAAAGACGAAGGATGG ACTAATGTATATGAGCTTATGGAAGCCGTCGTGGGGCAACCACCGCCTTATTTGCCTTCTGACCAATTTTCTCCAGAATTTTGCTCATTTATATCTGCAT GCGTTCATAAAGACCCAAAAGCTAGACTGTCAGCCCTTGAACTTATGGCACATCCATTTATGAACTTGTACGAGGACCTTCACGTAGATCTCTCATCTTA CTTCAAGAATGTGGGTTCACCTCTTGCATCCTTTTGA
AA sequence Show only first row Show all	>Lus10011945 pacid=23146509 polypeptide=Lus10011945 locus=Lus10011945.g ID=Lus10011945.BGIv1.0 annot-version=v1.0 MNKRSLNPNLNLKLSLPPPDEISFAKFLTQSGTFMDGDLLVNRDGVRIVTQTEPDAPPPIQPADNQMSLEDIDTVKVIGKGNGGIVQLVQHKWTGQFFAL KLGIIRRKSGLSGLVVVCHHHHLSYTFDQGCHCYAIVKVHGVFPSSLWYSASSRRIQFHRVHVGDSGAFVTPFMRVATHATRNFATLGQLTVTAAVKRGF HSELITLLRPTCRPVINSSIPLPVIQMNIQESARRAIAQELKINQSAQCPNVVMCYQSFYDNGAVSIILEYMDGGSLADFLRKVRTIPEPYLAAICKQVL KGLLYLHHEKHVIHRDMKPSNLLINHRGEVKITDFGVSAIMQNTSGQANTFVGTYNYMSPERISGEQYGYKSDIWSLGLVLMECATGHFPYSPPEKDEGW TNVYELMEAVVGQPPPYLPSDQFSPEFCSFISACVHKDPKARLSALELMAHPFMNLYEDLHVDLSSYFKNVGSPLASF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29810		MK1, ATMKK2	MAP KINASE KINASE 1, MAP kinas...		Lus10011945 [exp]	0	1
AT4G30340		ATDGK7	diacylglycerol kinase 7 (.1)		Lus10019987 [exp]	4.4	0.8691
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10011238 [exp]	31.7	0.8158
AT5G59030		COPT1	copper transporter 1 (.1)		Lus10016462 [exp]	32.5	0.8241
AT5G24430			Calcium-dependent protein kina...		Lus10008875 [exp]	34.4	0.8392
AT1G49710		ATFUT12, FUCTB,...	fucosyltransferase 12 (.1)		Lus10019855 [exp]	36.7	0.8234
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10009829 [exp]	41.3	0.8008
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10017527 [exp]	47.7	0.8193
AT1G61240			Protein of unknown function (D...		Lus10006728 [exp]	49.8	0.8296
AT2G24300			Calmodulin-binding protein (.1...		Lus10036301 [exp]	54.6	0.8083
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10038727 [exp]	56.0	0.7928

Compare expression of checked genes

Lus10011945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.