Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12010 604 / 0 unknown protein AT4G29780 561 / 0 unknown protein AT3G55350 157 / 2e-42 PIF / Ping-Pong family of plant transposases (.1) AT3G63270 146 / 8e-39 unknown protein AT3G19120 106 / 2e-24 PIF / Ping-Pong family of plant transposases (.1) AT1G72270 78 / 3e-15 unknown protein AT5G41980 62 / 6e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024997 [exp] 271 / 9e-89 AT5G12010 246 / 1e-80 unknown protein Lus10027622 [exp] 135 / 1e-37 AT4G29780 67 / 7e-14 unknown protein Lus10025271 [exp] 107 / 7e-25 AT3G19120 654 / 0.0 PIF / Ping-Pong family of plant transposases (.1) Lus10024452 [exp] 65 / 6e-11 AT5G41980 301 / 2e-100 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011946 pacid=23146507 polypeptide=Lus10011946 locus=Lus10011946.g ID=Lus10011946.BGIv1.0 annot-version=v1.0 ATGGAAATATCTTCATTCCCATTTTTGAACCCTGAAGAGATTTCCACCTTCTACTCCTTATTCCAGGATATGGATAGTAACTTCAACTTCAGTGGCGGAG CTGATAATAATAATACCACTTTTAGTTTCGGAGTAGACGGCGACGGAAACAACGCTTCCAAGAAGCGCAGAAGGAAAGACGCCGGCGACGACGGCGACGA ATCCAAGAATATTAAGAAGAAGAATGCTACGGCTGCGGCGGCGGCGACCAAGGGTTTCCTCAGCTCTCTCATGCTATTAGACGAGGAAGAGAAGCAAGAG CAGAATCAGTACGTCGTTGAGTCGCAGCTAGACAACTCCCTCCTCGATTCCAATTACGACCAAAAGGTACGAGCCATTAATGATTTCAATTCGGAGATGG TAACACATCATTCCAATTTGAATGAATTGGACCAATCCAGAATCAAACGATCTCGTCGTTCCGCTTCCGCCATTGCCACAGCCGCCGGNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCGGCGGAAGTAGCGGCGGCGGCGGCGGCGGCTCTACA AGCACACCGCCGCCTCATCAGCGGCGACTGTGGGTGAAGGACAGGTCAAAGGACTGGTGGGAGCGGTGTAACCATCCTGACTTCCCTGAAGAAGAGTTCA AAAAGGCGTTTAGGATGAGCAAGGCCACGTTTGATTTGATCTGCGACGAATTGGATTCGGTTGTGACGAAGAAGAACACAATGTTGCGAGACGCAATTCC AGTAAGGCAGCGTGTTGCGGTGTGCATCTGGAGGCTAGCCACAGGGGAGCCTCTACGCATTGTGTCGAAGAAGTTCGGATTAGGGATATCCACTTGTCAC AAGCTGGTCCTAGAGGTATGCTCAGCTATCAGAACAGTACTAATGCCAAAGTTTCTCCAATGGCCTGACGAGGAGAAAATGGGAGCCATTAAAGGTGAGT ATGAATCAGTTTCAGGGATACCAAACGTTGGTGGCTCAATGTACACAACACACATCCCAATCATAGCTCCCAAAATCAGCGTGGCTGCTTACTTCAACAA GAGGCATACCGAGAGGAATCAGAAGACTTCGTATTCGATCACGGTTCAAGGGGTTGTGGATGCCAGAGGGGTTTTCACAGATGTTTGTATCGGTTGGCCT GGTTCGATGCCGGACGATCAAGTGCTGGAGAAATCAGCTTTGTACCAGAGAGCCAGTAAGGGTTTGCTGAAAGATGTTTGGATTGTTGGAACTAGTGGGT ATCCTTTGATGGACTGGGTTCTAGTTCCGTACACTCACCAGAACCTGACGTGGACTCAGCATGCTTTCAACGAGAAGATTGGGGAGGTTCAGGGAGTTGC CAAGGATGCGTTTGGGAGGTTGAAAGGGAGGTGGTCTTGTCTACAGAAGAGGACGGAGGTGAAGTTGCAGGACTTGCCTGTTGTTCTTGGTGCTTGCTGT GTGTTGCATAATATCTGCGAGCTGAGGAATGAGACGGTGGATTCTGAACTGAAGTTGGATATTTTCGACGATGAGATGATCCCGGAGAACAATCTGAGAT CGGTTGGAGCGATTCAGGCGAGGGATCACATTGCTCACAACCTCTTGCATCATGGCCGCGCAGGAACTTCTTTCCTATAG
AA sequence Show only first row Show all	>Lus10011946 pacid=23146507 polypeptide=Lus10011946 locus=Lus10011946.g ID=Lus10011946.BGIv1.0 annot-version=v1.0 MEISSFPFLNPEEISTFYSLFQDMDSNFNFSGGADNNNTTFSFGVDGDGNNASKKRRRKDAGDDGDESKNIKKKNATAAAAATKGFLSSLMLLDEEEKQE QNQYVVESQLDNSLLDSNYDQKVRAINDFNSEMVTHHSNLNELDQSRIKRSRRSASAIATAAXXXXXXXXXXXXXXXXXXXXXXXXXTGGSSGGGGGGST STPPPHQRRLWVKDRSKDWWERCNHPDFPEEEFKKAFRMSKATFDLICDELDSVVTKKNTMLRDAIPVRQRVAVCIWRLATGEPLRIVSKKFGLGISTCH KLVLEVCSAIRTVLMPKFLQWPDEEKMGAIKGEYESVSGIPNVGGSMYTTHIPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVDARGVFTDVCIGWP GSMPDDQVLEKSALYQRASKGLLKDVWIVGTSGYPLMDWVLVPYTHQNLTWTQHAFNEKIGEVQGVAKDAFGRLKGRWSCLQKRTEVKLQDLPVVLGACC VLHNICELRNETVDSELKLDIFDDEMIPENNLRSVGAIQARDHIAHNLLHHGRAGTSFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29780			unknown protein		Lus10011946 [exp]	0	1
AT4G00300			fringe-related protein (.1.2)		Lus10018823 [exp]	1.0	0.9805
AT1G06450			Polynucleotidyl transferase, r...		Lus10035078 [exp]	2.8	0.9684
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10032372 [exp]	2.8	0.9662
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10023099 [exp]	3.0	0.9668
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10033420 [exp]	3.9	0.9593
AT3G18930			RING/U-box superfamily protein...		Lus10012033 [exp]	4.0	0.9316
AT3G57450			unknown protein		Lus10031071 [exp]	4.1	0.9314
AT4G00300			fringe-related protein (.1.2)		Lus10005120 [exp]	4.2	0.9479
AT1G07160			Protein phosphatase 2C family ...		Lus10042275 [exp]	5.3	0.9552
AT4G29780			unknown protein		Lus10027622 [exp]	5.5	0.9558

Compare expression of checked genes

Lus10011946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.