Plant FIBer expression Database

Lus10011947 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G17520 39 / 0.0001 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1)
AT1G54260 38 / 0.0002 winged-helix DNA-binding transcription factor family protein (.1)
AT1G72740 38 / 0.0002 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030935
[exp]
83 / 2e-20 AT1G72740 171 / 5e-51 Homeodomain-like/winged-helix DNA-binding family protein (.1.2)
Lus10040111
[exp]
49 / 5e-08 AT1G72740 135 / 6e-38 Homeodomain-like/winged-helix DNA-binding family protein (.1.2)
Lus10027621
[exp]
0 / 1 AT1G72740 107 / 1e-27 Homeodomain-like/winged-helix DNA-binding family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G147400
[exp]
44 / 2e-06 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1)
Potri.018G066300
[exp]
44 / 2e-06 AT1G72740 186 / 6e-58 Homeodomain-like/winged-helix DNA-binding family protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10011947 pacid=23146514 polypeptide=Lus10011947 locus=Lus10011947.g ID=Lus10011947.BGIv1.0 annot-version=v1.0
ATGGACGGCGGAGGAGGAGGAAGCTTTGCGAGCTGGTATTGCCAAACACGGCACCGGAAAGTGGCGATCCTGAATTCAACCCTTACCTCTCCACTCGGTC
TAACGCCGATCTCAAGGTATGATCCTATGATTTTCAAAGCGATTTTGGCCTTGAGTTGCAATGAGACAACTGTTGTGGATATCCCTGCAATAATTGATTT
CATTGAGCAACGTCATGAGTTGCCACAAAATGGCAGGAAGCAAGACCTTTCATTGAAAGATTAG
AA sequence
>Lus10011947 pacid=23146514 polypeptide=Lus10011947 locus=Lus10011947.g ID=Lus10011947.BGIv1.0 annot-version=v1.0
MDGGGGGSFASWYCQTRHRKVAILNSTLTSPLGLTPISRYDPMIFKAILALSCNETTVVDIPAIIDFIEQRHELPQNGRKQDLSLKD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10011947
[exp]
0 1
AT2G41510 ATCKX1, CKX1 cytokinin oxidase/dehydrogenas... Lus10035433
[exp]
3.9 0.8521
AT2G27550 ATC centroradialis (.1) Lus10043385
[exp]
7.0 0.8467
AT3G47340 AT-ASN1, DIN6, ... DARK INDUCIBLE 6, ARABIDOPSIS ... Lus10026376
[exp]
7.2 0.8407
AT5G37990 S-adenosyl-L-methionine-depend... Lus10028500
[exp]
8.7 0.8640
AT2G46950 CYP709B2 "cytochrome P450, family 709, ... Lus10019186
[exp]
9.4 0.8031
AT1G60790 TBL2 TRICHOME BIREFRINGENCE-LIKE 2,... Lus10030590
[exp]
9.7 0.8763
Lus10016946
[exp]
11.4 0.7847
AT5G43650 bHLH BHLH92, bHLH092 basic helix-loop-helix (bHLH) ... Lus10008804
[exp]
11.6 0.7580
AT2G44840 AP2_ERF ATERF13, EREBP ethylene-responsive element bi... Lus10029318
[exp]
14.1 0.8422
AT2G20820 unknown protein Lus10037883
[exp]
15.1 0.8421

Lus10011947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.