Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20520 437 / 2e-155 WAV2 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 48 / 4e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G66900 47 / 5e-06 alpha/beta-Hydrolases superfamily protein (.1) AT5G14390 48 / 6e-06 alpha/beta-Hydrolases superfamily protein (.1) AT4G31020 45 / 3e-05 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G24760 45 / 4e-05 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 45 / 4e-05 alpha/beta-Hydrolases superfamily protein (.1) AT3G30380 45 / 5e-05 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G32190 44 / 0.0001 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G14570 43 / 0.0002 AtAARE, AARE acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027619 [exp] 545 / 0 AT5G20520 479 / 4e-172 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10042075 [exp] 56 / 1e-08 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018081 [exp] 56 / 2e-08 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022307 [exp] 48 / 6e-06 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10031953 [exp] 45 / 4e-05 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10035148 [exp] 45 / 4e-05 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10039405 [exp] 45 / 5e-05 AT4G14570 902 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10019604 [exp] 44 / 8e-05 AT4G31020 487 / 9e-176 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10040038 [exp] 44 / 9e-05 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G145200 [exp] 470 / 3e-168 AT5G20520 511 / 0.0 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G064800 [exp] 464 / 5e-166 AT5G20520 529 / 0.0 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 51 / 4e-07 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G090800 [exp] 50 / 1e-06 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G112600 [exp] 49 / 2e-06 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G340000 [exp] 48 / 4e-06 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G136900 [exp] 47 / 8e-06 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 45 / 3e-05 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G160400 [exp] 45 / 7e-05 AT4G14570 971 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Potri.006G188100 [exp] 44 / 7e-05 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10011949 pacid=23146527 polypeptide=Lus10011949 locus=Lus10011949.g ID=Lus10011949.BGIv1.0 annot-version=v1.0 ATGGTGTCCTACTTCAACGTGTTGCTCTACGGCGTCGGCGGAATAGTATTCGCCGGAATGGCCTTGCTTGTCGCCTTTCAAGAGCGCCTCGTCTACGTCC CCGTCGTCCCCGGTCTCACCAAGTCCTACCCGATTACTCCCGCCCGCCTCCGTCTCACTTACGAGGACGTCTGGCTCAGATCCTCCGATGGCGTCCGCCT TCATGCCTGGTTTATTAAGCTCTTCCCGGACTGCAGAGGTCTCCAATTTCAATTCCCCCCACTTCTTTACCTAATCTCTCCTTTCCGTTGTAAACCTTCT CTGAGTGCTTACGGAGCAAGTGATGGGTTTCCTTCCCAACATGGAATTACAAAGGATGCTGAGGCTGCTTTGGATCATCTTTGTCAACGGAGTGATATTG ATACCTCGAGAATTGTTGTGTTTGGGAGGTCACTTGGAGGTGCTGTTGGGGCCCTACTTACGAAAAACAACCCTGATAAGGTTGCTGGTCTCATACTGGA AAATACATTTACGTCCATTCTGGATATGGCAGGAGTTCTCCTTCCCTTTCTGAAGTGGGTTATCGGAGGATCTGGGGAGAAAGGTGTTAAAATTCTTAAT TTTGTTGTACGTTCTCCTTGGAGCACCATTGATGTAATTGGACAGGTTAAGCGACCAATCCTGTTCCTGTCAGGTTTGCAAGATGAAATGGTTCCTCCAT CCCATATGCAGATGCTTTATGGTAAAGCAGCTGCTCACAACAAGGAATGTTTGTTCGTGGAATTTCCTTCCGGCATGCACATGGATACCTGGTTAGCCGG TGGGGATCATTATTGGGAAACAGTTCAGATGTTCCTCGAAAAATATGCTCCGAGGAATGATGTAACTGATTCTTCTTCTAGCATTAGTCATGGTAAGGGC TGGAAGCCGACTGCTTACCCTTGTGATAAGATGATTCTATGCACTCTTCCTTGCTGA
AA sequence Show only first row Show all	>Lus10011949 pacid=23146527 polypeptide=Lus10011949 locus=Lus10011949.g ID=Lus10011949.BGIv1.0 annot-version=v1.0 MVSYFNVLLYGVGGIVFAGMALLVAFQERLVYVPVVPGLTKSYPITPARLRLTYEDVWLRSSDGVRLHAWFIKLFPDCRGLQFQFPPLLYLISPFRCKPS LSAYGASDGFPSQHGITKDAEAALDHLCQRSDIDTSRIVVFGRSLGGAVGALLTKNNPDKVAGLILENTFTSILDMAGVLLPFLKWVIGGSGEKGVKILN FVVRSPWSTIDVIGQVKRPILFLSGLQDEMVPPSHMQMLYGKAAAHNKECLFVEFPSGMHMDTWLAGGDHYWETVQMFLEKYAPRNDVTDSSSSISHGKG WKPTAYPCDKMILCTLPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20520		WAV2	WAVY GROWTH 2, alpha/beta-Hydr...		Lus10011949 [exp]	0	1
AT3G28700			Protein of unknown function (D...		Lus10015353 [exp]	3.3	0.7850
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Lus10007420 [exp]	5.5	0.7796
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Lus10038681 [exp]	23.7	0.7389
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10026672 [exp]	34.3	0.7163
AT5G57440		GPP2, GS1	GLYCEROL-3-PHOSPHATASE 2, Halo...		Lus10006954 [exp]	45.6	0.7176
					Lus10001500 [exp]	56.9	0.6741
AT2G37560		ATORC2	origin recognition complex sec...		Lus10025330 [exp]	65.7	0.7065
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10027628 [exp]	106.4	0.6908
AT1G17665			unknown protein		Lus10006153 [exp]	127.8	0.6437
AT5G46910			Transcription factor jumonji (...		Lus10035385 [exp]	143.3	0.6500

Compare expression of checked genes

Lus10011949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.