Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027047 [exp] 442 / 2e-154 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1) Lus10011962 [exp] 231 / 1e-75 ND / Lus10008435 [exp] 238 / 2e-75 AT5G37290 184 / 6e-56 ARM repeat superfamily protein (.1.2) Lus10012639 [exp] 231 / 3e-75 ND / Lus10020970 [exp] 235 / 1e-74 AT1G17930 123 / 2e-30 Aminotransferase-like, plant mobile domain family protein (.1) Lus10042635 [exp] 216 / 4e-69 AT3G53010 78 / 2e-16 Domain of unknown function (DUF303) (.1) Lus10010369 [exp] 202 / 3e-64 ND / Lus10032960 [exp] 194 / 4e-62 ND / Lus10021761 [exp] 181 / 1e-56 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10011950 pacid=23146505 polypeptide=Lus10011950 locus=Lus10011950.g ID=Lus10011950.BGIv1.0 annot-version=v1.0 ATGAGAGGGAAAGGAAAACAAGTTGGTGTTTTGGATCGGATGAAGGAGCGGGTGGTCACCGCTTCTCGACGGAAAGAGGGAGAGGCAGCGAAGAAGAACA AGAAGTTGCGTATCTACGACTCCCCTGATCGGTACCCTCCTGTTACGTACCCGGCGAGGTCGTATCCGGAGGATGATGACGAGGATGAGGGTCCACCGCC GGGGTTTGAGTACGACGACACACAGATTTCCCCGCCGATGGCTTCTCCACACATGCCTCCTCTGCACACGAGATCTCCGCACTTGGCTTCTACGGGCTCG TCACATGCCTCCGCCAGTGTCGGCGTGAGAGGAGGGAAGCCTAGCCGTCTCGCGCGGGTCCGGGAGGAGGATCCCGCCAGTGCAGTAGACTTTTTTGGGC TTAGTCGTACATGGGAGCTCACAGCTGGGATTCCCGAGGGGGGACCGAGGACGCCGACTGTGATCCCGAGCTTCGGGGGTCACATTGCACACTACTTGTG GGAGTCGGGCGAGGGCTACAGGGATCTTAAGGTATTCAGGTTCCTTAAGCGCCCTAAACAGTGGGACACTGTGAGCGAGTTCGACATCCAAACTAGGACC ATTTGGCCGATCATGCAAGAGTCCGGAGTTCTTCACTTGGGCCGATGCATGTCGACCCACTTTGATGAGCCTCTGATGGAGGCATTTGTTGAGAGGTGGC AGCCGGATACTAACACCTTTCACATGCCTCGAGTCCTTCTGAATCGGAACGCCTCAAGTCCTTTCGAAATTAGGGTTTCGGAAGGCCTAGAGTCCTTCCG AATCGGAAAGCCTCAAGTCCTTCCGAAATTAGGGTTTCGGAAGTCCCGGTCGTAA
AA sequence Show only first row Show all	>Lus10011950 pacid=23146505 polypeptide=Lus10011950 locus=Lus10011950.g ID=Lus10011950.BGIv1.0 annot-version=v1.0 MRGKGKQVGVLDRMKERVVTASRRKEGEAAKKNKKLRIYDSPDRYPPVTYPARSYPEDDDEDEGPPPGFEYDDTQISPPMASPHMPPLHTRSPHLASTGS SHASASVGVRGGKPSRLARVREEDPASAVDFFGLSRTWELTAGIPEGGPRTPTVIPSFGGHIAHYLWESGEGYRDLKVFRFLKRPKQWDTVSEFDIQTRT IWPIMQESGVLHLGRCMSTHFDEPLMEAFVERWQPDTNTFHMPRVLLNRNASSPFEIRVSEGLESFRIGKPQVLPKLGFRKSRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011950 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10030852 [exp]	13.7	0.8153
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002019 [exp]	14.5	0.8205
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10013001 [exp]	20.4	0.7981
AT2G30770		CYP71A13	cytochrome P450, family 71, su...		Lus10043310 [exp]	22.2	0.8143
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024910 [exp]	24.6	0.8083
AT1G17930			Aminotransferase-like, plant m...		Lus10000686 [exp]	38.1	0.7963
AT3G09870			SAUR-like auxin-responsive pro...		Lus10026531 [exp]	39.0	0.7694
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029691 [exp]	45.4	0.6853
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10029280 [exp]	46.1	0.7900
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010482 [exp]	48.9	0.7905

Compare expression of checked genes

Lus10011950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.